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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCGGGATTTGGTATTGGCTGCTTGGGAAAGCTGAACTCTGCATACGAAAACGATAAAGAGTTGATGATTGGTTTCTACAAGTTTCTCGCAAAgtaagctcttctcttcacggtgttatcagaaattcgattcatatatatgaggggctgatttcacagtttaatag

Basic information

species Arabidopsis thaliana
transcript AT3G27050.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124826515|gb|EH911381.1|EH911381
EST:     TACGAAAACGATAAAGAGTTGATGATTGGTTTCTACAAGTTTCTCGCAAA                         GGAGGAGATGGCATGTGAAGAAGC
genomic: TACGAAAACGATAAAGAGTTGATGATTGGTTTCTACAAGTTTCTCGCAAAgtaagctctt ... agtttaatagGGAGGAGATGGCATGTGAAGAAGC
EST: gi|125000986|gb|EL073255.1|EL073255
EST:     ACGAAAACGATAAAGAGTTGATGATTGGTTTCTACAAGTTTCTACGCAAA                         GGAGGAGATGGCATGTGAA
genomic: ACGAAAACGATAAAGAGTTGATGATTGGTTTCTACAAGTTTCT-CGCAAAgtaagctctt ... agtttaatagGGAGGAGATGGCATGTGAA
EST: gi|124955990|gb|EL030957.1|EL030957
EST:     TTTCTCGCAAA                         GGAGGAGATTGGCATGTGAAGAAGCTGAGCTTGGACAAGATGGATTTGAAC
genomic: TTTCTCGCAAAgtaagctctt ... agtttaatagGGAGGAGA-TGGCATGTGAAGAAGCTGAGCTTGGACAAGATGGATTTGAAC