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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaactaggaggagtcataattctttcctttttttatagagattagttaaagtgtatgacaagtgtgtttgggacattgcagCTTAAACTGGCAGCATCAGCTATGTAAAAATCCAAGGCCTAATCCTGACATCAAGACATTGTTCTTGGATCACTCTTGCTCACCATCAAACGGTGCTCGT

Basic information

species Arabidopsis thaliana
transcript AT3G16830.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G16830.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: LOC_Os01g15020.1 (Oryza sativa), 3'ss of exon 4
-----------------------gtgaactaggaggagtcataattctttcctttttttatagagattagttaaagtgtatga---caagtgtgtttgg-gacatt-gcagCTTAAACTGGCAGCATCAGCTATGTAAAAATCCAAGGCCTAATCCTGACATCAAGACATTGTTCTTGGATCACTCTTGCTCACCATCAAACGGTGCTCGT
                       |  |  |   |      || |    ||    | || |  | ||||   |    | | |||   ||    | | ||  |||||| ||||||| ||||||||||||||||| ||||| |||||  |||| ||||| || |||||||| ||||||   |||||  | ||| | ||  |||| || ||||||
gtttgggaagacaatatactattgctatttgttacattatatgacctgtttgagtgttcactgtgattttctgttatatgtgagttcataattctatgacgacatttgcagCTTGAACTGGCAGCATCAGCTTTGTAAGAATCCTCGGCCAAATCCAGATATCAAGACTTTGTTCACTGATCATACCTGCACTCCGCCAAATGGAGCTCGT

upper sequence: AT3G16830.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: PP1S316_34V6.1 (Physcomitrella patens), 3'ss of exon 4
---------------------------------------------------------------------------------------gtgaactaggaggagtcataattctttcctttttttatagag-attag--ttaaagtgtatgacaagtgtgtttgggacattgcagCTTAAACTGGCAGCATCAGCTATGTAAAAATCCAAGGCCTAATCCTGACATCAAGACATTGTTCTTGGATCACTCTTGCTCACCATCAAACGGTGCTCGT
                                                                                        || |  |       |  || ||   | |   ||    |||| |||    | || |  | | |   ||  ||||      ||||||  | || |||||||||||||| || ||||| |||||||| ||||||||||| |||||| | ||| | |||||| | |||   ||  | || || ||||| 
gtaataaatagcccatgtgttctaccttgagctcctcaagattatccaggtggtggcttctgcttgtagttgagcattgttggtggcatgcaacaccgcactttgtattttccttcgaattcaccagagtattgacatgaaggatttttatgtgttcgtttatctatttgcagTCTCAATTGGCAGCATCAGCTTTGCAAAAACCCAAGGCCGAATCCTGACATTAAGACACTCTTCATTGATCACACATGCGGGCCTCCTAATGGGGCTCGA

upper sequence: AT3G16830.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: PP1S99_260V6.1 (Physcomitrella patens), 3'ss of exon 4
------gtgaactaggaggagtcataa---ttctttccttt---ttttatagagatt--agttaaagtgtatgacaagtgtgt---ttgggacattgcagCTTAAACTGGCAGCATCAGCTATGTAAAAATCCAAGGCCTAATCCTGACATCAAGACATTGTTCTTGGATCACTCTTGCTCACCATCAAACGGTGCTCGT
        |    | | |  ||  |||   |||||| | ||    || ||    |||  | | | | |   |  |  |||  |   |||  ||  |||||  | ||||||||||| ||||| || || || |||||||| |||||||||||||||||| ||||  | |||||| ||||   |||  | || ||||| |||
ttttcaacgtttcatgtgttgttttaaatattcttttcattgtacttaatgagaatttaaataagaattgctttcttgtgcttattttgttaccctgcagTCTCAACTGGCAGCACCAGCTTTGCAAGAACCCAAGGCCGAATCCTGACATCAAGACACTGTTTATTGATCACACTTGTGGACCTCCTAATGGTGCCCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttttatagagattagttaaagtgtatgacaagtgtgtttgggacattgcagCTTAAACTGGCAGCATCAGCTATGTAAAAATCCAAGGCCTAATCCTGACATCAAGACATTGTTCTTGGATCACTCTTGCTCACCATCAAACGGTGCTCGT
              attagttaaa  TA-rich tract