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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagtacatttgttctattctgcggtctactggtttttactggtgtaactgctgattcatctcttaaatgaatttgtaatgtaatctcttttaatctatagGTGAAAACAAAGTTGAAAGGTCACCAGAAGCACATAACTGGTCTAGCATTCTCTACCGCGCTCAATATTCTTGTCTCTTCTGGTGCCGATGCTCAG

Basic information

species Arabidopsis thaliana
transcript AT3G16830.1
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125160710|gb|EL188173.1|EL188173
EST:     GTATACATATTTACAACGTCAGGGTAGATGAG                         GTGAAAACAAAGTTGAAAGGTCACCAGAAGCACATAACTGGTCTAGCATTC
genomic: GTATACATATTTACAACGTCAGGGTAGATGAGgtatagtaca ... taatctatagGTGAAAACAAAGTTGAAAGGTCACCAGAAGCACATAACTGGTCTAGCATTC
EST: gi|86064674|gb|DR360431.1|DR360431
EST:     GGGTAGATGAG                         GTGAAAACAAAGTTGAAAGGTCACCAGAAGCACATAACTGGTCTAGCATTC
genomic: GGGTAGATGAGgtatagtaca ... taatctatagGTGAAAACAAAGTTGAAAGGTCACCAGAAGCACATAACTGGTCTAGCATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactgctgattcatctcttaaatgaatttgtaatgtaatctcttttaatctatagGTGAAAACAAAGTTGAAAGGTCACCAGAAGCACATAACTGGTCTAGCATTCTCTACCGCGCTCAATATTCTTGTCTCTTCTGGTGCCGATGCTCAG
                                          ttttaat  putative branch site (score: 3)
                                      tctctttt  CT-rich tract
                 ttaaatgaatttgtaa  TA-rich tract