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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtctttctattactgtgcaaattcttatgtttttttctccttctcctcaaatggaatttacgaacctacattgattttccctgagtaatatgaaaaactttaagttaacaaagccatattggtcgtttgattgtgcagAGGATGGTAAAGAGACATTAAATGAGGAAACACCTGAAAATAATTCTCAGTTTACCACTGTTTATGTGGGAAACCTTGCTCCAGAG

Basic information

species Arabidopsis thaliana
transcript AT3G14100.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G14100.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA07G04640.1 (Glycine max), 3'ss of exon 9
gttgtctttctattactgtgcaaattcttatgtttttttctccttctcctcaaatggaatttacgaacctacattgattttccctgagtaatatgaaaaactttaagttaacaaagccatattggtcgtttgattgtgcagAGGATGGTAAAGAGACATTAAATGAGGAAACACCTGAAAATAATTCTCAGTTTACCACTGTTTATGTGGGAAACCTTGCTCCAGAG
                |||  ||||| || ||||| |      ||||  |                     || |||  |      | |   |||  |  | | || ||||| ||    | ||  ||   |  |||| |||| ||||||||||||||||  ||    ||  | ||||| || ||| |||||| ||| |||||||||||||| |||||||||||||||
---------------ttgtaaaaattattgtgtttgtgaagtattctgttt-----------------tcccagtgaact------aatggaatgctagccatgaaattaaccaacatgttttattc---tatttgtacagAAGATGGTAAAGAGACATCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACTGTTTATGTGGGTAACCTTGCTCCAGAG

upper sequence: AT3G14100.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv09s0002g00880.t01 (Vitis vinifera), 3'ss of exon 9
gttgtctttctattactgtgcaaattcttatgtttttttctccttctcctcaaatggaatttacgaacctacattgattttccctgagtaatatg--aaaaactttaa----gttaacaaagcc-atattggtcgt-ttgattgtgcagAGGATGGTAAAGAGACATTAAATGAGGAAACACCTGAAAATAATTCTCAGTTTACCACTGTTTATGTGGGAAACCTTGCTCCAGAG
                                                 ||||      |||   |    |   |  | | |  ||  | |||||  | | | | | |    | ||| ||| |  || || || |  ||  ||||||||| |||||||||||||||  || | | ||  | ||||| || ||  |||||| ||| |||||||||||||| || ||||||||||||
-------------------------------------------------tcaaggatgcttttgtactaaatcattgtctcctttggattatatgctagagattatgatagtgataagaaaccttatgtttgttgcattccttgtgcagAAGATGGTAAAGAGACAGCAACTAATGAGGCTCCTGACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116378429|gb|EG421021.1|EG421021
EST:     GCTCAGTTCTGATGGAAAAAGTGTTGTGGAACTTACAACTGGCTCATCAG                         AGGATGGTAAAGAGACATTAAATGAGGAAACACCTGAAAATAATTCTCAGT
genomic: GCTCAGTTCTGATGGAAAAAGTGTTGTGGAACTTACAACTGGCTCATCAGgttgtctttc ... gattgtgcagAGGATGGTAAAGAGACATTAAATGAGGAAACACCTGAAAATAATTCTCAGT
EST: gi|124774263|gb|EH864392.1|EH864392
EST:     ATGGAAAAAGTAGTTGTGGAACTTACAACTGGCTCATCAG                         AGGATGGTAAAGAGACATTAAATGAGGAAACACCTGAAAATAATTCTCAGT
genomic: ATGGAAAAAGT-GTTGTGGAACTTACAACTGGCTCATCAGgttgtctttc ... gattgtgcagAGGATGGTAAAGAGACATTAAATGAGGAAACACCTGAAAATAATTCTCAGT
EST: gi|164038127|gb|ES174785.1|ES174785
EST:     GCTCAGTTCTGATGGAAAA-GTGTTGTGGAACTTACAACTGGCTCATCAG                         AGGATGGTAAAGAG
genomic: GCTCAGTTCTGATGGAAAAAGTGTTGTGGAACTTACAACTGGCTCATCAGgttgtctttc ... gattgtgcagAGGATGGTAAAGAG
EST: gi|124976886|gb|EL050270.1|EL050270
EST:     TCAGTTCTGATGGAAAAAGTGTTGTGGAACTTACAACTGGCTCATCAG                         AGGATGGTAAAGAGACATTAAATGAGGAAACACCTGAAAATAATTCTCAGT
genomic: TCAGTTCTGATGGAAAAAGTGTTGTGGAACTTACAACTGGCTCATCAGgttgtctttc ... gattgtgcagAGGATGGTAAAGAGACATTAAATGAGGAAACACCTGAAAATAATTCTCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtaatatgaaaaactttaagttaacaaagccatattggtcgtttgattgtgcagAGGATGGTAAAGAGACATTAAATGAGGAAACACCTGAAAATAATTCTCAGTTTACCACTGTTTATGTGGGAAACCTTGCTCCAGAG
         aaaaactttaagttaa  TA-rich tract