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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATGGTAAAGAGACATTAAATGAGGAAACACCTGAAAATAATTCTCAGTTTACCACTGTTTATGTGGGAAACCTTGCTCCAGAGgtacattatccactaggaagtgctccttgtaatactatcacaacaaaaacagtttatttgaggttctttgatgaagttttacattagtagatttcgggtacatcgttacagctatctatcttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G14100.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G14100.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA07G04640.1 (Glycine max), 5'ss of exon 10
AGGATGGTAAAGAGACATTAAATGAGGAAACACCTGAAAATAATTCTCAGTTTACCACTGTTTATGTGGGAAACCTTGCTCCAGAGgtacattatccactaggaagtgctccttgtaatacta---tcacaacaaaaacagtttatttgaggttctttgat--gaagttttacattagtagatttcgggtacatcgttacagctatctatcttgcag
| ||||||||||||||||  ||    ||  | ||||| || ||| |||||| ||| |||||||||||||| ||||||||||||||||||     |   || |    |  |  || ||||  ||   | | ||||| | || || ||     ||| ||||||   ||  ||| ||    || | ||                                
AAGATGGTAAAGAGACATCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACTGTTTATGTGGGTAACCTTGCTCCAGAGgtaagagcttttcttgtgttttttaattttaattttacatttagaacaataccatttcatcaactgttatttgattgaaaagtttgcaaacttataattt-------------------------------

upper sequence: AT3G14100.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA16G01230.1 (Glycine max), 5'ss of exon 10
AGGATGGTAAAGAGACATTAAATGAGGAAACACCTGAAAATAATTCTCAGTTTACCACTGTTTATGTGGGAAACCTTGCTCCAGAGgtacattatccactaggaagtgctccttgtaatactatcacaacaaaaacagtttatttgaggttctttgat--gaagttttaca---ttagtagatttcgggtacatcgttacagctatctatcttgcag
   ||||||||||||| |  ||    ||  | ||||| || ||| |||||| ||| || ||||||||||| ||||||||||| |||||| |  |        |   |  |  || | | | | | | || || | || || |      ||| |||| |   ||  ||| ||   ||| ||   |||  |                            
---ATGGTAAAGAGACCTCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTCCGGAGgtaaaagactagt---gtttttttaattttgacaat-taagaataataccaattcaccaactgttatttggttgaaaagtttgcaagcttattatgattcatgc---------------------------

upper sequence: AT3G14100.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv09s0002g00880.t01 (Vitis vinifera), 5'ss of exon 10
AGGATGGTAAAGAGACATTAAATGAGGAAACACCTGAAAATAATTCTCAGTTTACCACTGTTTATGTGGGAAACCTTGCTCCAGAGgtac---attatccactaggaagtgctccttgtaatactatcacaacaaaaacagtttatttgaggttctttgatgaagttttacattagtagatttcgggtacatcgttacagctatctatcttgcag
| |||||||||||||||  || | | ||  | ||||| || ||  |||||| ||| |||||||||||||| || |||||||||||||||    |  || | | |  || |   |||| | |   |||              ||| |||    | ||||| |   |  |  |||||    | ||  |  |   | ||      ||||    |||||
AAGATGGTAAAGAGACAGCAACTAATGAGGCTCCTGACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaacaattcgccaaaaattttccctttttactttattt-----------atttgttta---tgctttggtttggcatctcatta----acttgtgaaaatcctttttgttcatctgctatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125221069|gb|EL235154.1|EL235154
EST:     AAAATAATTCTCAGTTTACCACTGTTTATGTGGGAAACCTTGCTCCAGAG                         GTAACTCAGCTTGATCTACACCGTTACTTCCATGCTCTTGGCGCTGGAGTT
genomic: AAAATAATTCTCAGTTTACCACTGTTTATGTGGGAAACCTTGCTCCAGAGgtacattatc ... tatcttgcagGTAACTCAGCTTGATCTACACCGTTACTTCCATGCTCTTGGCGCTGGAGTT
EST: gi|116378429|gb|EG421021.1|EG421021
EST:     AAAATAATTCTCAGTTTACCACTGTTTATGTGGGAAACCTTGCTCCAGAG                         GTAACTCAGCTTGATCTACACCGTTACTTCCATGCTCTTGGCGCTGGAGTT
genomic: AAAATAATTCTCAGTTTACCACTGTTTATGTGGGAAACCTTGCTCCAGAGgtacattatc ... tatcttgcagGTAACTCAGCTTGATCTACACCGTTACTTCCATGCTCTTGGCGCTGGAGTT
EST: gi|125001990|gb|EL074259.1|EL074259
EST:     TCTCAGTTTACCACTGTTTATGTGGGAAACCTTGTCTCCAGAG                         GTAACTCAGCTTGATCTACACCGTT-CTTCCATGCTCTTGGCGCTGGAGT
genomic: TCTCAGTTTACCACTGTTTATGTGGGAAACCTTG-CTCCAGAGgtacattatc ... tatcttgcagGTAACTCAGCTTGATCTACACCGTTACTTCCATGCTCTTGGCGCTGGAGT