1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CAAAGGCTTTGGTTTCGTGAGATATAACACTCATCCCGAAGCTGCTCTTGCTATTCAGATGGGTAACACTCAGCCTTACCTCTTTAACAGACAGATAAAGgtacttttaagtttggcttaccactctaaaccctctctatttgatcttactgctcccaaaagttacttcatctgaaacttagcatgcaatctgacatttgttatcatgttaattgtag
species | Arabidopsis thaliana |
transcript | AT3G14100.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTATTCAGATGGGTAACACTCAGCCTTACCTCTTTAACAGACAGATAAAG TGCTCATGGGGAAACAAGCCAACTCCACCAGGTACAGCCTCAAACCCACTTEST: gi|116378429|gb|EG421021.1|EG421021
genomic: CTATTCAGATGGGTAACACTCAGCCTTACCTCTTTAACAGACAGATAAAGgtacttttaa ... ttaattgtagTGCTCATGGGGAAACAAGCCAACTCCACCAGGTACAGCCTCAAACCCACTT
EST: CTATTCAGATGGGTAACACTCAGCCTTACCTCTTTAACAGACAGATAAAG TGCTCATGGGGAAACAAGCCAACTCCACCAGGTACAGCCTCAAACCCACTTEST: gi|124980360|gb|EL053317.1|EL053317
genomic: CTATTCAGATGGGTAACACTCAGCCTTACCTCTTTAACAGACAGATAAAGgtacttttaa ... ttaattgtagTGCTCATGGGGAAACAAGCCAACTCCACCAGGTACAGCCTCAAACCCACTT
EST: CTATTCAGATGGGTAACACTCAGCCTTACCTCTTTAACAGACAGATAAAG TGCTCATGGGGAAAEST: gi|124913964|gb|EH987838.1|EH987838
genomic: CTATTCAGATGGGTAACACTCAGCCTTACCTCTTTAACAGACAGATAAAGgtacttttaa ... ttaattgtagTGCTCATGGGGAAA
EST: CTATTCAGATGGGTAACACTCAGCCTTACCTCTTTAACAGACAGATAAAG TGCTCATGGGGAAACAAGCCAACTCCACCAGGTACAGCEST: gi|116399920|gb|EG442512.1|EG442512
genomic: CTATTCAGATGGGTAACACTCAGCCTTACCTCTTTAACAGACAGATAAAGgtacttttaa ... ttaattgtagTGCTCATGGGGAAACAAGCCAACTCCACCAGGTACAGC
EST: CTATTCAGATGGGTAACACTCAGCCTTACCTCTTTAACAGACAGATAAAG TGCTCATGGGGAAACAAGCCAACTCCACCAGGTACAGCCTCAAACCCACTT
genomic: CTATTCAGATGGGTAACACTCAGCCTTACCTCTTTAACAGACAGATAAAGgtacttttaa ... ttaattgtagTGCTCATGGGGAAACAAGCCAACTCCACCAGGTACAGCCTCAAACCCACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAGGCTTTGGTTTCGTGAGATATAACACTCATCCCGAAGCTGCTCTTGCTATTCAGATGGGTAACACTCAGCCTTACCTCTTTAACAGACAGATAAAGgtacttttaagtttggcttaccactctaaaccctctctatttgatcttactgctcccaaaagttacttcatctgaaacttagcatgcaatctgacatttgttatcatgttaattgtag
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