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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATTTCAACATTTTTGTTGGAGATCTCAGTCCAGAGGTCACTGATGCAACATTATATCAAAGCTTTTCTGTCTTTTCCAGTTGTTCgtaagttctgttgcttgatcagctccttttaactaacttattctacttggttgtaaaacaaatatcataatctctgactgtgtctaatattttgaag

Basic information

species Arabidopsis thaliana
transcript AT3G14100.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G14100.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os07g42380.1 (Oryza sativa), 5'ss of exon 6
GTCATTTCAACATTTTTGTTGGAGATCTCAGTCCAGAGGTCACTGATGCAACATTATATCAAAGCTTTTCTGTCTTTTCCAGTTGTTCgtaagt-tctgttgc-ttgatcagctccttttaacta--acttattctacttggttgt---aaaacaaatatcataatctctgactgtgtctaatattttgaag
  |||||||| ||||||||||| ||||| || |||||||| |||||| |  |||||| |  |  ||| ||||  | ||||||||| |||||||| | | || | || |||  ||  | ||  ||   | |    | | |||| | |    |  | |   | ||||| | |   ||||  |  |    ||   
ACCATTTCAATATTTTTGTTGGTGATCTTAGCCCAGAGGTTACTGATTCCGCATTATTTGCATTCTTCTCTGGATATTCCAGTTGCTCgtaagtatttattacctttatccactagtgttttctgccattggcccaatttggcttttcctaccccagctttataatattt---tgtgcgttgtcagctgtc-

upper sequence: AT3G14100.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA16G01230.1 (Glycine max), 5'ss of exon 6
GTCATTTCAACATTTTTGTTGGAGATCTCAGTCCAGAGGTCACTGATGCAACATTATATCAAAGCTTTTCTGTCTTTTCCAGTTGTTCgtaagttctgttgcttgatcagctccttttaactaacttattctacttggttgtaaaacaaatatcataatctctgactgtgtctaatattttgaag--------
|||||| ||||||||||||||| ||||| ||||| ||||| |||||||| ||  | | |  | |||||||||||| | ||| |||||||||||||    |   | || |  || |  |||   | | || |   ||   ||||     | | |    |  |    |  | |||| |  |   ||         
GTCATTACAACATTTTTGTTGGCGATCTAAGTCCTGAGGTTACTGATGCTACGCTGTTTGCATGCTTTTCTGTCTATCCCACTTGTTCgtaagtttcact--ctcatgatttcttagtaaagcagtcatccacttt--ctgtatttggagttttg-gacttgaaccaatctctattcatcgaaaatagaaaaa

upper sequence: AT3G14100.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA07G04640.1 (Glycine max), 5'ss of exon 6
GTCATTTCAACATTTTTGTTGGAGATCTCAGTCCAGAGGTCACTGATGCAACATTATATCAAAGCTTTTCTGTCTTTTCCAGTTGTTCgtaagttctgttgcttgatcagctccttttaactaacttat---tctacttggttgtaaaa-caaatatca--taatctctgactgtgtctaatattttgaag---------------------------------------------------------------------------------------------------
|||| | ||| || |||||||| ||||| ||||| ||||| |||||||| || || | |  | |||||||||||| | |||||||||||||||||    |   | || |  || |  |||   | |      | |  ||  |||||    |  |  | |   ||||||||    |    |||      ||                                                                                                    
GTCACTACAATATATTTGTTGGCGATCTAAGTCCTGAGGTTACTGATGCTACGTTGTTTGCATGCTTTTCTGTCTATCCCAGTTGTTCgtaagtttcact--ctcatgatttcttagtaaaacagtcgcctctttctttatttgtagtttcggacttgaatcaatctctgttcatccaaaatggaaaaaaaaattgtactgtctcaaaggatagttgtacggtatgttctttgcaattatgttggtaacttagattggctcatcatatttattttttctggcggctccag

upper sequence: AT3G14100.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv09s0002g00880.t01 (Vitis vinifera), 5'ss of exon 6
GTCATTTCAACATTTTTGTTGGAGATCTCAGTCCAGAGGTCACTGATGCAACATTATATCAAAGCTTTTCTGTCTTTTCCAGTTGTTCgtaagttctg--ttgcttgatcagctccttttaactaacttattctacttggttgtaaaacaaatatcataatctctgactgtgtctaatattttgaag-
|||| ||||||||||||||||| |||||||| || ||||| |||||||| ||||| | |  | |||||||||| ||| ||||||||||||||| |     || |     |  ||  || |      ||| ||||  |   || |        |  | |  ||  |          |||    |||   
GTCACTTCAACATTTTTGTTGGTGATCTCAGCCCTGAGGTTACTGATGCTACATTGTTTGCATGCTTTTCTGTTTTTCCCAGTTGTTCgtaagcttcactttacccatccttctgtttcttttgtcctttttcttttccttttttcctttttttcctttttcctttgaaaaacagaattgggtgattc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125049053|gb|EL121322.1|EL121322
EST:     TCTTTTCCAGTTGTTC                         GGATGCGAGAGTTATGTGGGACC-AAAAACTGGGCGCTCGAGAGGCTTTGG
genomic: TCTTTTCCAGTTGTTCgtaagttctg ... tattttgaagGGATGCGAGAGTTATGTGGGACCAAAAAACTGGGCGCTCGAGAGGCTTTGG
EST: gi|124862380|gb|EH946817.1|EH946817
EST:     GTCACTGATGCAACATTATATCAAAGCTTTTCTGTCTTTTCCAGTTGTTC                         GGATGCGAGAGTTA
genomic: GTCACTGATGCAACATTATATCAAAGCTTTTCTGTCTTTTCCAGTTGTTCgtaagttctg ... tattttgaagGGATGCGAGAGTTA
EST: gi|164124295|gb|EL997437.1|EL997437
EST:     GTCACTGATGCAACATTATATCAAAGCTTTTCTGTCTTTTCCAGTTGTTC                         GGATGCGAGAGTTATGTGGGACCAAAAAACTGGGCG
genomic: GTCACTGATGCAACATTATATCAAAGCTTTTCTGTCTTTTCCAGTTGTTCgtaagttctg ... tattttgaagGGATGCGAGAGTTATGTGGGACCAAAAAACTGGGCG
EST: gi|125278964|gb|EL293049.1|EL293049
EST:     GTCACTGATGCAACATTATATCAAAGCTTTTCTGTCTTTTCCAGTTGTTC                         GGATGCGAGAGTTATGTGGG
genomic: GTCACTGATGCAACATTATATCAAAGCTTTTCTGTCTTTTCCAGTTGTTCgtaagttctg ... tattttgaagGGATGCGAGAGTTATGTGGG
EST: gi|164012874|gb|ES123181.1|ES123181
EST:     TTTCTGTCTTTTCCAGTTGTTC                         GGATGCGAGAGTTATGTGGGACCAAAAAACTGGGCGCTCGAGAGGCTTTGG
genomic: TTTCTGTCTTTTCCAGTTGTTCgtaagttctg ... tattttgaagGGATGCGAGAGTTATGTGGGACCAAAAAACTGGGCGCTCGAGAGGCTTTGG