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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgaatttttttagcatcgctttgtctgaaaggtgcagttccgagtttatgttttaacttctccaattattctaatattggcagGTATGTTGGAAACATCCATACACAGGTCACAGAGCCTTTGCTTCAAGAGATTTTTACAAGCACTGGCCCTGTTGAAAGCAGTAAACTCATCAGAAAGGAT

Basic information

species Arabidopsis thaliana
transcript AT3G14100.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G14100.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA07G04640.1 (Glycine max), 3'ss of exon 2
----------gtgagtgaatttttttagcatcgctttgtctgaaaggtgcagttccgagtttat----gttttaacttctccaattattctaatattggcagGTATGTTGGAAACATCCATACACAGGTCACAGAGCCTTTGCTTCAAGAGATTTTTACAAGCACTGGCCCTGTTGAAAGCAGTAAACTCATCAGAAAGGAT
           ||| | || ||  |||      |  |   |      | | ||||    ||| |     || || |||||  |  | |   || ||  ||||||||||||| ||||||||||||||||| || |||||  |  | |||||  ||||  |  | |||||||| |||||| |  |||| || ||||||||||||
ttttgctttaatgactaaaattaattacttgttccctaatttttttcttctgttctttttttttaaaaattgtagcttctttatctttgagaaaat--gcagGTATGTTGGGAACATCCATACACAGGTAACTGAGCCGCTTTTGCAAGAAGTTTTCTCGGGTACTGGCCCAGTTGAAGGTTGTAAGCTTATCAGAAAGGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124821341|gb|EH906207.1|EH906207
EST:     CCAAGTGGAAACCTTCCTCCTGGTTTTGATCCCAGTACTTGCCGTAGCGT                         GTATGTTGGAAACATCCATACACAGGTCACAG
genomic: CCAAGTGGAAACCTTCCTCCTGGTTTTGATCCCAGTACTTGCCGTAGCGTgtgagtgaat ... atattggcagGTATGTTGGAAACATCCATACACAGGTCACAG
EST: gi|125162320|gb|EL189090.1|EL189090
EST:     CAAGTGGAAACCTTCCTCCTGGTTTTTGATCCCAGTACTTGCCGTAGCGT                         GTATGTTGGAAACATCCATACACAGGT
genomic: CAAGTGGAAACCTTCCTCCTGGTTTT-GATCCCAGTACTTGCCGTAGCGTgtgagtgaat ... atattggcagGTATGTTGGAAACATCCATACACAGGT
EST: gi|124792955|gb|EH882634.1|EH882634
EST:     TACTTGCCGTAGCGT                         GTATGTTGGAAACATCCATACACAGGTCACAGAGCCTTTGCTTCAAGAGAT
genomic: TACTTGCCGTAGCGTgtgagtgaat ... atattggcagGTATGTTGGAAACATCCATACACAGGTCACAGAGCCTTTGCTTCAAGAGAT
EST: gi|124867827|gb|EH952264.1|EH952264
EST:     AAGTGGAAACCTTCCTCCTGGTTTTGATCCCAGTACTTGCCGTAAGACGT                         GTATGTTGGAAACATCCATACACA
genomic: AAGTGGAAACCTTCCTCCTGGTTTTGATCCCAGTACTTGCCGTA-G-CGTgtgagtgaat ... atattggcagGTATGTTGGAAACATCCATACACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaggtgcagttccgagtttatgttttaacttctccaattattctaatattggcagGTATGTTGGAAACATCCATACACAGGTCACAGAGCCTTTGCTTCAAGAGATTTTTACAAGCACTGGCCCTGTTGAAAGCAGTAAACTCATCAGAAAGGAT
                                        ttctaat  putative branch site (score: 2)
                                   aattattctaatatt  TA-rich tract