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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACAAAGTGGAGAGAAGGTGGTAGCGGACAACATGTTGAATATGATCAACGTCCTGATATGTTTAGgtaatatattttctactgttacctaatataatttgttttatactcgctcttaccttttgttgaatctctctcttcttaatttttatag

Basic information

species Arabidopsis thaliana
transcript AT3G13670.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA08G47680.1 (Glycine max), 5'ss of exon 8
CTACAAAGTGGAGAGAAGGTGGTAGCGGACAACATGTTGAATATGATCAACGTCCTGATATGTTTAGgtaatatattttctactgttacctaatataatttgttttatactc-gctcttaccttttgttgaatctctctcttcttaatttttatag-----------------------------------------------
| ||||||||||||||       || || || ||||||||||||||||||||||||||||||||||||| |  | ||||||     | |||  |    ||| | ||| | ||  ||  |  || || ||     | |   |  || || || || |                                               
CAACAAAGTGGAGAGACACCTCCAGTGGGCAGCATGTTGAATATGATCAACGTCCTGATATGTTTAGgttaccttttttct-----ttccttttgatttttctcttaaattctacttgtttctattattatggtttttgttgttttatgttcatggttatcatttatccatctgcttcagtcttatatttttaatttttgcag

upper sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA18G53810.1 (Glycine max), 5'ss of exon 8
CTACAAAGTGGAGAGAAGGTGGTAGCGGACAACATGTTGAATATGATCAACGTCCTGATATGTTTAGgtaatatattttctactgttacctaatataatttgttttatac-tcgctcttaccttttgttgaatctctctcttctta--atttttatag--------------------------------------------------------------
  ||||||||||||||       || || || |||||||||||||||||||| |||||||||||||||| |  | ||| || || ||   |  | |  ||| || ||    | ||| |||   | | ||   | | ||| || |||   ||||| | |                                                              
-AACAAAGTGGAGAGACACCTCCAGTGGGCAGCATGTTGAATATGATCAACGCCCTGATATGTTTAGGttacctttttccttctttttgattttttcttttattctacttgttgctattattatct-ttacttgtttctattattacggtttttgttgtttcatgttcatggttatcatttatcaatctgcttcagtcttatatttttaatttctgtaga

upper sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 8
CTACAAAGTGGAGAGAAGGTGGTAGCGGACAACATGTTGAATATGATCAACGTCCTGATATGTTTAGgtaatatattttctactgttacctaatataatttgtt-ttatactcgctcttaccttttgttgaatctctctcttctta---atttttatag-------------------
| ||||| ||||||||       || ||||| |||||||| ||||||||||| ||||||||||||||||| | |     |        |||  | |  ||| || ||   || ||  ||  ||| | || |||   | |||| |||   || ||  |                     
CAACAAAATGGAGAGACACCTCCAGTGGACAGCATGTTGACTATGATCAACGCCCTGATATGTTTAGgtattcttccccccctccccccctcttttcttttcttcttccccttgcagttctcttctttttaatggttttcttgttatcaatgttcttgaaccttatctttttatgtag

upper sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA10G44050.1 (Glycine max), 5'ss of exon 8
CTACAAAGTGGAGAGAAGGTGGTAGCGGACAACATGTTGAATATGATCAACGTCCTGATATGTTTAGgtaatatattttctactgttacctaatataatttgttttatactcgc-tcttaccttttgttgaatctctctcttcttaatttttatag-----------------------------
| ||||| ||||||||       || ||||| ||||| || ||||||||||||||||||||||||||||  | | ||  |  |     |||  | |  |||  |||   | |   |  | |  ||| || |||   | ||||    ||  ||||                               
CAACAAAATGGAGAGACACCTCCAGTGGACAGCATGTGGACTATGATCAACGTCCTGATATGTTTAGgt--tttcttcccccccaccccctccttttcttttcttttcccccttgtagttctctttttttaatagttttcttgcatatggttatcaatgttcttgagtctcctctttttatgtag

upper sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 8
CTACAAAGTGGAGAGAAGGTGGTAGCGGACAACATGTTGAATATGATCAACGTCCTGATATGTTTAGgtaatatattttctactgttacctaatataatttgttttatactcgctcttaccttttgttgaatctctctcttcttaatttttatag--------------
| ||||||||||| ||  ||| ||  || || ||||||||||||||||| || |||||||||||||||| | ||   |  |    ||       ||  |||||   ||  | |  ||||  |||| |      ||  ||||  | |||||||  |              
CAACAAAGTGGAGGGACAGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAGgtga-attgatgttgtgtttgtgggccatgctttgtg--atttttgaacttattttttttaatccttcattcttgattatttttactgtttgcttcatccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86063829|gb|DR359586.1|DR359586
EST:     GGTGGTAGCGGACAACATGTTGAATATGATCAACGTCCTGATATGTTTAG                         AGGGACAGTTAGATACGCAAGTGCACATGCTCATTTAGGGAGAACTGCTAG
genomic: GGTGGTAGCGGACAACATGTTGAATATGATCAACGTCCTGATATGTTTAGgtaatatatt ... atttttatagAGGGACAGTTAGATACGCAAGTGCACATGCTCATTTAGGGAGAACTGCTAG