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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACAAGAAATGGAGAGAAGGCTTCCATGTAACCTCAATGGCAACAGCTGGAAATCGATGGGGTGTTGTTATGTCCCGCAATTCTGGCTACAGTGAACAGgttagacttcaccgatatagatgaatttcttccgtttccttcagttttggatctgtcgcgttgatttctaattctcctgttttcgcttatatctcctctacag

Basic information

species Arabidopsis thaliana
transcript AT3G13670.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G017835_T01 (Zea mays), 5'ss of exon 13
AAACAAGAAATGGAGAGAAGGCTTCCATGTAACCTCAATGGCAACAGCTGGAAATCGATGGGGTGTTGTTATGTCCCGCAATTCTGGCTACAGTGAACAGgttagacttcaccgatatagatgaatttcttccgtttccttcagttttggatct-gtcgcgttgatttctaattctcctgttttcgcttatatctcctctacag
|||||||||||||| |||||| || ||||| ||  ||||||||||| | || |||||||||| | | || |||||||||| | |||| |    ||| |||||| |    || ||||   ||        |   | |  | ||   | ||  |||  |    || |||    |||    || ||      | || |      || 
AAACAAGAAATGGAAAGAAGGTTTTCATGTGACTGCAATGGCAACATCAGGCAATCGATGGGCTATAGTCATGTCCCGCAGTGCTGGATTTTCTGAGCAGgtttg----caacgatgctgaactccaaatagagataacgtcgtatatgtttctcattttctttattaagcatttggatggttagaaaaagatttaaaagccaa

upper sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA10G44050.1 (Glycine max), 5'ss of exon 14
AAACAAGAAATGGAGAGAAGGCTTCCATGTAACCTCAATGGCAACAGCTGGAAATCGATGGGGTGTTGTTATGTCCCGCAATTCTGGCTACAGTGAACAGgttagacttcaccgatatagatgaatttcttccgtttcctt---cagttttggatctgtcgcgttgatttctaattctcctgttttcgctta-tatctcctctacag--------------------------------------------------------------------------
||||||||| ||||||||||| || ||||| || |||||||| || ||||||| ||| ||||||||||||||||| || ||| |||| | |||| |||||||| |   | |    | ||  | |  || |  | |||  |    ||||| |    |  |    ||  | | | ||| |||||| |  | | | ||| || |  |  |                                                                          
AAACAAGAAGTGGAGAGAAGGTTTTCATGTCACTTCAATGGCCACTGCTGGAAGTCGTTGGGGTGTTGTTATGTCTCGAAATGCTGGATTCAGTAAACAGgtttgctgttaaaattgtatttca--ttatgacatttggtataacagttcttctgcatttctatttgtgtgtgatt-tcctgtctctgttcagtatgtcatacaatggtggccggtttggacataagcctgttaccagacagactggcttcatgctctcatcattaaccttttaactgtag

upper sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 14
AAACAAGAAATGGAGAGAAGGCTTCCATGTAACCTCAATGGCAACAGCTGGAAATCGATGGGGTGTTGTTATGTCCCGCAATTCTGGCTACAGTGAACAGgttagacttcaccgatatagatgaatttcttccgtttccttcagttttggatctgtcgcgttgatttctaattctcctgttttcgctta-tatctcctctacag--------------------------------------------------------------
||||||||| ||||||||||| || ||||| || |||||||| || ||||||| ||| ||||||||||||||||| || ||| |||| | |||| |||||||| |   | |    | ||    |  || |    |||  |  |    |    |  |    ||  | |   ||| || ||| |  | | | ||| || |  |  |                                                              
AAACAAGAAGTGGAGAGAAGGTTTTCATGTCACTTCAATGGCTACTGCTGGAAGTCGCTGGGGTGTTGTTATGTCTCGAAATGCTGGATTCAGTAAACAGgtttgctgttaaaattgtattcca--ttatgaaatttggtataacagttctgcaatgcttttagtgtgcgatt-tcttgtctctgttcagtatgtcatgcaatggtggaaaataagcctgttactatacttccttcatgctctcatcatttaccttttaactgtag

upper sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA08G47680.3 (Glycine max), 5'ss of exon 12
AAACAAGAAATGGAGAGAAGGCTTCCATGTAACCTCAATGGCAACAGCTGGAAATCGATGGGGTGTTGTTATGTCCCGCAATTCTGGCTACAGTGAACAGgttagacttcaccgatatagatgaatttcttccgtttccttcagttttggatctgtcgcgttgatttctaattctcctgttttcgcttatatctcctctacag
||||||||| ||||||||||| || ||||| || |||||||| || ||||||| ||| ||||||||||||||||| || ||| |||| | |||||| |||||| | ||| |    | |||||  | ||  |   ||| | |||| |     |  | |     ||| | ||  |||  |   |   || || |    | || | 
AAACAAGAAGTGGAGAGAAGGTTTTCATGTGACTTCAATGGCTACTGCTGGAAGTCGTTGGGGTGTTGTTATGTCACGAAATGCTGGATTCAGTGATCAGgtttg-ctttatatttttagattgaattggttaattttcatcaggtaaaattagggctgaaagatctgta--tctgataactcatctcatgttgagtttaaaa

upper sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA18G53810.1 (Glycine max), 5'ss of exon 14
AAACAAGAAATGGAGAGAAGGCTTCCATGTAACCTCAATGGCAACAGCTGGAAATCGATGGGGTGTTGTTATGTCCCGCAATTCTGGCTACAGTGAACAGgttagacttcaccgatatagatgaatttcttccgtttccttcagttttggatctgtcgcgttgatttctaattctcctgttttcgcttatatctcctctacag-
 |||||||| ||||||||||| || ||||| ||||||||||| || ||||||| ||| ||||||||||||||||| || ||| | || | |||||| |||||| | ||| |   || |||||  | ||  |  |||| | |||| |     |  | |  |   || | || ||      | |   || || |    | || |  
-AACAAGAAGTGGAGAGAAGGTTTTCATGTGACCTCAATGGCCACTGCTGGAAGTCGTTGGGGTGTTGTTATGTCGCGAAATGCCGGATTCAGTGATCAGGtttg-ctttat--atttagattcaattgattagttttcatcaggtaaaattaaggctggaaaatctgtatttgataactctcatctcatgttgagtttaaaat

upper sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 14
AAACAAGAAATGGAGAGAAGGCTTCCATGTAACCTCAATGGCAACAGCTGGAAATCGATGGGGTGTTGTTATGTCCCGCAATTCTGGCTACAGTGAACAGgttagacttcaccgatatagatgaatttcttccgtttcc---ttcagttttggatctgtcgcgttgatttctaattctcctgttttcgcttatatctcctctacag
||||||||| ||||||||||| ||||||||||| || |||||||| |||||||  |||||||| || || ||||| |||||| ||||||  ||||| |||||| | ||| |   | ||   | | ||||  |  |||||   || | | |  || | |        || |  || |  |     |  || |    | ||       
AAACAAGAAGTGGAGAGAAGGATTCCATGTAACTTCCATGGCAACTGCTGGAAGCCGATGGGGGGTAGTCATGTCTCGCAATGCTGGCTTTAGTGATCAGgttgggctttatt-acatgtcttattttccacattttcccctttgattctcagaacggagcaacctatcttgaagttgcactggtctgcctggtccaccaa-----

upper sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: PP1S131_16V6.1 (Physcomitrella patens), 5'ss of exon 14
AAACAAGAAATGGAGAGAAGGCTTCCATGTAACCTCAATGGCAACAGCTGGAAATCGATGGGGTGTTGTTATGTCCCGCAATTCTGGCTACAGTGAACAGgt-----------tagacttcaccgatatagatgaatttcttccgtttccttcagttttggatc--------tgtcgcgttgatttctaattctcctgttttcgcttatatctcctctacag-----------------------------------------------------
 || ||||||||| ||||||||||| | || || || ||||| ||||| ||||  ||||||||||| |||||||| || ||  | || | |  ||| |||||           ||  | |    ||| ||    ||   | | |  ||  | |   || |  ||        | |   ||  ||    |  | | |||       |   ||  |    |  |                                                     
CAATAAGAAATGGCGAGAAGGCTTCTACGTTACATCTATGGCCACAGCGGGAAGCCGATGGGGTGTAGTTATGTCGCGAAACGCAGGTTTCTCTGATCAGgtaattagcgctctaagcctacttgatttacgaaaaccgcatactatttttgcttcttcgactcggagcagatatgaagtaaatgaaaatatttgctgaccaatttagaattcctgtcatcggacatcacctgattacattcctctctcttaccgaatgtatttgccctctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125166025|gb|EL192019.1|EL192019
EST:     GAAATCGATGGGGTGTTGTTATGTCCCGCAATTCTGGCTACAGTGAACAG                         GTTGTGGAACTTGATTTT
genomic: GAAATCGATGGGGTGTTGTTATGTCCCGCAATTCTGGCTACAGTGAACAGgttagacttc ... tcctctacagGTTGTGGAACTTGATTTT
EST: gi|125087133|gb|EL146367.1|EL146367
EST:     GAAATCGATGGGGTGTTGTTATGTCCCGCAATTCTGGCTACAGTGAACAG                         GTTGTGGAACTTGATTTTCTGTATCCAAGTGAAGGCATCCACAG
genomic: GAAATCGATGGGGTGTTGTTATGTCCCGCAATTCTGGCTACAGTGAACAGgttagacttc ... tcctctacagGTTGTGGAACTTGATTTTCTGTATCCAAGTGAAGGCATCCACAG