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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGTATCATCATGTTCGAATCTCTGGGCATTGATAATGGATGCTGGAACTGGCTTCACGCACCAAGTCTATGAACTCTCTCCTGTATTCTTGCACAAGgttgtctgatgtttctctgttagttatttttatatctgtgttctgtcaagatgatcttacctgagagtgaattctgttttgaatcag

Basic information

species Arabidopsis thaliana
transcript AT3G13670.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 12
CTGTGTATCATCATGTTCGAATCTCTGGGCATTGATAATGGATGCTGGAACTGGCTTCACGCACCAAGTCTATGAACTCTCTCCTGTATTCTTGCACAAGgttgt---ctgatgtttctctgttagttatttttatatctgt--gttctgtcaa-------gatgatcttacctgagagtgaattctgttttgaatcag
 |||||  |||| || || ||||| |||||| | || ||||||||||||||||| ||||| |||||||| |||||||| || ||| | ||||| ||||||||  |   ||| |||   |  |||  ||||||||  ||  ||   || |   ||        || ||  ||  | ||  | | || | |     | |||
TTGTGTTGCATCTTGCTCAAATCTGTGGGCACTTATTATGGATGCTGGAACTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGgtgatattctggtgtccata-gttttttattttttaattagttaattttaataataataataataataataatttaggatcatttttctgacataccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059947|gb|DR355704.1|DR355704
EST:     CTGGCTTCACGCACCAAGTCTATGAACTCTCTCCTGTATTCTTGCACAAG                         GAATGGATTATGGAGCAGTGGGAGAAGAACTACTACATTAGTTCTATTGCT
genomic: CTGGCTTCACGCACCAAGTCTATGAACTCTCTCCTGTATTCTTGCACAAGgttgtctgat ... tttgaatcagGAATGGATTATGGAGCAGTGGGAGAAGAACTACTACATTAGTTCTATTGCT