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gtttgtaattgaactttatttttgtttttgtatttaattaggttgtccgaggtttcttctgatatcctgtttggagtctcggcacctctaagttcttatgttttctctctattaactagcctaacaggtcatgttttacttcggtttcagTTATGTGCATGGGGATGTTAAGCCAGAAAATTTCTTACTCGGCCAGCCTTCAACGTCTCAAGAGAAAAAACTGTTTCTTGTTGATTTGGGACTAG
species | Arabidopsis thaliana |
transcript | AT3G13670.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCATTGCGGTTGAATCACTTTCCATCCTTGAAAAGAATGCATGCAAAAGG TTATGTGCATGGGGATGTTAAGCCAGAAAATTEST: gi|86063829|gb|DR359586.1|DR359586
genomic: GCATTGCGGTTGAATCACTTTCCATCCTTGAAAAGA-TGCATGCAAAAGGgtttgtaatt ... tcggtttcagTTATGTGCATGGGGATGTTAAGCCAGAAAATT
EST: TGCATTGCGGTTGAATCACTTTCCATCCTTGAAAAGATGCATGCAAAAGG TTATGTGCATGGGGATGTTAAGCCAGAAAATTTCTTACTCGGCCAGCCTTC
genomic: TGCATTGCGGTTGAATCACTTTCCATCCTTGAAAAGATGCATGCAAAAGGgtttgtaatt ... tcggtttcagTTATGTGCATGGGGATGTTAAGCCAGAAAATTTCTTACTCGGCCAGCCTTC
ttatgttttctctctattaactagcctaacaggtcatgttttacttcggtttcagTTATGTGCATGGGGATGTTAAGCCAGAAAATTTCTTACTCGGCCAGCCTTCAACGTCTCAAGAGAAAAAACTGTTTCTTGTTGATTTGGGACTAG
ttttacttc CT-rich tract
tattaacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtaattgaactttatttttgtttttgtatttaattaggttgtccgaggtttcttctgatatcctgtttggagtctcggcacctctaagttcttatgttttctctctattaactagcctaacaggtcatgttttacttcggtttcagTTATGTGCATGGGGATGTTAAGCCAGAAAATTTCTTACTCGGCCAGCCTTCAACGTCTCAAGAGAAAAAACTGTTTCTTGTTGATTTGGGACTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA