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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactggattccccctttctcctatttctgtttttttctcctgtctgtatcattgaagttagatcctctcttctttgttttggcctcagGTTATGGACATGCTTGGGCCTAGCTTATGGGATTTATGGAATACTTCAGGGCAAGC

Basic information

species Arabidopsis thaliana
transcript AT3G13670.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G13670.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA18G53810.1 (Glycine max), 3'ss of exon 4
gtactggattccccctttctcctatttctgtttttttctcctgtctgtatcattgaagttagatcctctcttctttgttttggcctcagGTTATGGACATGCTTGGGCCTAGCTTATGGGATTTATGGAATACTTCAGGGCAAGC-
                 |   | |   |  |||| || ||   ||   | | ||    ||  ||  | | || |||| | ||    |||||||||||||||||||| || ||||| |||||| | |||||| | ||| | || || 
----------tatgacctacacaacaaccattttattttctcatcaccaactttactatttaat--ttttttttttggtatgtatgcaggTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTTTGGAATTCCTCAAGCCAGGCG

upper sequence: AT3G13670.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv06s0004g01090.t01 (Vitis vinifera), 3'ss of exon 4
gtactggattccccctttctcctatttctgttt-ttttctcctgtctgtatcattgaagttagatcctctcttctttgttttggcctcagGTTATGGACATGCTTGGGCCTAGCTTATGGGATTTATGGAATACTTCAGGGCAAGC
               | |   | |   |  | | | || |  | | | |||| ||     | | ||     || ||| | | |  |  |||||||||||||||| |||||||||||||||||| | |||||| |||||||||||||
--------------gtatgatccacagcaatgtgtcttttgttttttatatctttatgtattggtctaacattttttatat-gttcaaagGTTATGGACATGCTAGGGCCTAGCTTATGGGATGTCTGGAATTCTTCAGGGCAAGC

upper sequence: AT3G13670.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: EFJ38433 (Selaginella moellendorffii), 3'ss of exon 3
------------gtactggattccccctttctcctatttctgtttttttctcctgt-ctgtatcattgaagt-tagatcctctcttctttgttttggcctcag-
            ||  ||| ||     ||  |  | |||   || |   ||   ||  | |||  ||| |||  |  |  |  |  || ||   || |   ||       | | || | |    | |  ||     |     |||||||     |  || | |||      
gtatgtagcattgttttggctttttttttctttgtgttttgtttctaagctatcgtgttttatgtttgcagTACACTTGGTGGCAGCTATGGCGTGCCTCGAGTGCACCATAAGGGGCGTCAAGGAGATTACTACGTAATGGTTATGGACATGCTTGGGCCTAGCTTGTGG

upper sequence: AT3G13670.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 3
-------gtactggattccccctttctcctatttctgtttttttctcctgtctgtatcattgaagttagatcctctcttctttgttttggcctcagGTTATGGACATGCT-TGGGCCTAGCTTATGGGATT--TATGGAATACTTCAGGGCAAGC-----------------
       | | ||  ||   | ||| |  | ||| |||||| ||     |      |  || | ||| |   | | |||  | |         |  |    |      |  |  |    |   | | ||||  || | |||  ||  || || ||                 
gtatgtagcattgt-tttggctttttttttctttgtgttttgtttctaagctatcgtgttttatgtttgcagCACACTTGGTGGCAGCTATGGCGTGCCTCGAGTGCACCATAAGGGGCGTCAAGGAGATTACTACGTAATGGTTATGGACATGCTTGGGCCTAGCTTGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctcctgtctgtatcattgaagttagatcctctcttctttgttttggcctcagGTTATGGACATGCTTGGGCCTAGCTTATGGGATTTATGGAATACTTCAGGGCAAGC
                             tcctctcttctttgtt  CT-rich tract
                                       tttgtttt  TA-rich tract