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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGAATCTCAAGAATCTAGGGACTTGAATTGGAATGCACAAAGACGGCCATTTGATCCTGATAGATTCGCAAGGGATTGAATACCCTTAACATCACATGgtgagagcaagtagatgaaatggagcttgacgttacttgtactctatataaatatccaatgttttttctctgatttcag

Basic information

species Arabidopsis thaliana
transcript AT3G07440.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19741997|gb|AU227350.1|AU227350
EST:     ATTTGATCCTGATAGATTCGCAAGGGATTGAATACCCTTAACATCACATG                         GTAGAGCAGGCGAAGAATGAGCAGGCTGCTCTGAAGAAATAGAATAATATA
genomic: ATTTGATCCTGATAGATTCGCAAGGGATTGAATACCCTTAACATCACATGgtgagagcaa ... ctgatttcagGTAGAGCAGGCGAAGAATGAGCAGGCTGCTCTGAAGAAATAGAATAATATA
EST: gi|116474370|gb|EG516962.1|EG516962
EST:     ATTTGATCCTGATAGATTCGCAAGGGATTGAATACCCTTAACATCACATG                         GTAGAGCAGGCGAAGAATGAGCAGGCTGCTCTGAAGAAATGGAATAATATA
genomic: ATTTGATCCTGATAGATTCGCAAGGGATTGAATACCCTTAACATCACATGgtgagagcaa ... ctgatttcagGTAGAGCAGGCGAAGAATGAGCAGGCTGCTCTGAAGAAATAGAATAATATA