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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaatccctgactatattcttataatgatatttaggtgtggatgggtggttttgtgattggttgatcttcttaatcattgcagGAACAGGCGGTCTTTCAGCGATCAAACAAAG

Basic information

species Arabidopsis thaliana
transcript AT3G07440.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19741997|gb|AU227350.1|AU227350
EST:     GCAAATTATG-ATCCGCTGAAGAAGACGATGAAGA-TTTAATCCATACAG                         G-ACA-GCGTTCTTTCAGCGATCAAACAAAG
genomic: GCAAATTATGAATCCGCTGAAGAAGACGATGAAGATTTTAATCCATACAGgtttaatccc ... atcattgcagGAACAGGCGGTCTTTCAGCGATCAAACAAAG
EST: gi|116474370|gb|EG516962.1|EG516962
EST:     GCAAATTATGAATCCGCTGAAGAAGACGATGAAGATTTTAATCCATACAG                         GAACAGGCGGTCTTTCAGCGATCAAACAAAG
genomic: GCAAATTATGAATCCGCTGAAGAAGACGATGAAGATTTTAATCCATACAGgtttaatccc ... atcattgcagGAACAGGCGGTCTTTCAGCGATCAAACAAAG
EST: gi|86069422|gb|DR365179.1|DR365179
EST:     GCAAATTATGAATCCGCTGAAGAAGACGATGAAGATTTTAATCCATACGG                         GAACAGGCGGTCTTTCAGCGATCAAACAAGG
genomic: GCAAATTATGAATCCGCTGAAGAAGACGATGAAGATTTTAATCCATACAGgtttaatccc ... atcattgcagGAACAGGCGGTCTTTCAGCGATCAAACAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttaggtgtggatgggtggttttgtgattggttgatcttcttaatcattgcagGAACAGGCGGTCTTTCAGCGATCAAACAAAG
                                        tcttaat  putative branch site (score: 3)
                                          ttaatcatt  TA-rich tract