1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGAGGCTTTATTGGGATGAAGGGTATTCAAAGAAACTCGCAAGTGATCATGCAAATTATGAATCCGCTGAAGAAGACGATGAAGATTTTAATCCATACAGgtttaatccctgactatattcttataatgatatttaggtgtggatgggtggttttgtgattggttgatcttcttaatcattgcag
species | Arabidopsis thaliana |
transcript | AT3G07440.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCAAATTATG-ATCCGCTGAAGAAGACGATGAAGA-TTTAATCCATACAG G-ACA-GCGTTCTTTCAGCGATCAAACAAAGEST: gi|116474370|gb|EG516962.1|EG516962
genomic: GCAAATTATGAATCCGCTGAAGAAGACGATGAAGATTTTAATCCATACAGgtttaatccc ... atcattgcagGAACAGGCGGTCTTTCAGCGATCAAACAAAG
EST: GCAAATTATGAATCCGCTGAAGAAGACGATGAAGATTTTAATCCATACAG GAACAGGCGGTCTTTCAGCGATCAAACAAAGEST: gi|86069422|gb|DR365179.1|DR365179
genomic: GCAAATTATGAATCCGCTGAAGAAGACGATGAAGATTTTAATCCATACAGgtttaatccc ... atcattgcagGAACAGGCGGTCTTTCAGCGATCAAACAAAG
EST: GCAAATTATGAATCCGCTGAAGAAGACGATGAAGATTTTAATCCATACGG GAACAGGCGGTCTTTCAGCGATCAAACAAGG
genomic: GCAAATTATGAATCCGCTGAAGAAGACGATGAAGATTTTAATCCATACAGgtttaatccc ... atcattgcagGAACAGGCGGTCTTTCAGCGATCAAACAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGGCTTTATTGGGATGAAGGGTATTCAAAGAAACTCGCAAGTGATCATGCAAATTATGAATCCGCTGAAGAAGACGATGAAGATTTTAATCCATACAGgtttaatccctgactatattcttataatgatatttaggtgtggatgggtggttttgtgattggttgatcttcttaatcattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA