1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgaatctagctagagtcatgtggtgggtgatatgtgtgtgctgtattctgcttttactgtagtttctcagctgtcttgaacaatctctctgtcgttgcagCCTTTGCACCAATGAATGCAGCACCAGAATCTCAAGAATCTAGGGACTTGAATTGGAATGCACAAAGACGGCCATTTGATCCTGATAGATTCGCAAGGGA
species | Arabidopsis thaliana |
transcript | AT3G07440.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATCAGGGATAAGTTTGAGTATGATAGAGAAACGAGGATGAGAGATAAAG CCTTTGCACCAATGAATGCAGCACCAGAATCTCAAGAATCTAGGGACTTGAEST: gi|116474370|gb|EG516962.1|EG516962
genomic: AATCAGGGATAAGTTTGAGTATGATAGAGAAAGGAGGATGAGAGATAAAGgtgagttttc ... gtcgttgcagCCTTTGCACCAATGAATGCAGCACCAGAATCTCAAGAATCTAGGGACTTGA
EST: AATCAGGGATAAGTTTGAGTATGATAGAGAAAGGAGGATGAGAGATAAAG CCTTTGCACCAATGAATGCAGCACCAGAATCTCAAGAATCTAGGGACTTGA
genomic: AATCAGGGATAAGTTTGAGTATGATAGAGAAAGGAGGATGAGAGATAAAGgtgagttttc ... gtcgttgcagCCTTTGCACCAATGAATGCAGCACCAGAATCTCAAGAATCTAGGGACTTGA
ttctgcttttactgtagtttctcagctgtcttgaacaatctctctgtcgttgcagCCTTTGCACCAATGAATGCAGCACCAGAATCTCAAGAATCTAGGGACTTGAATTGGAATGCACAAAGACGGCCATTTGATCCTGATAGATTCGCAAGGGA
tctctctgtc CT-rich tract
ttttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaatctagctagagtcatgtggtgggtgatatgtgtgtgctgtattctgcttttactgtagtttctcagctgtcttgaacaatctctctgtcgttgcagCCTTTGCACCAATGAATGCAGCACCAGAATCTCAAGAATCTAGGGACTTGAATTGGAATGCACAAAGACGGCCATTTGATCCTGATAGATTCGCAAGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaatc