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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagcaagtagatgaaatggagcttgacgttacttgtactctatataaatatccaatgttttttctctgatttcagGTAGAGCAGGCGAAGAATGAGCAGGCTGCTCTGAAGAAATAGAATAATATAAGTTTGTGTTTAGTTTTTACTTTATGCAGTGAATATACTTTCATGTAAG

Basic information

species Arabidopsis thaliana
transcript AT3G07440.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19741997|gb|AU227350.1|AU227350
EST:     ATTTGATCCTGATAGATTCGCAAGGGATTGAATACCCTTAACATCACATG                         GTAGAGCAGGCGAAGAATGAGCAGGCTGCTCTGAAGAAATAGAATAATATA
genomic: ATTTGATCCTGATAGATTCGCAAGGGATTGAATACCCTTAACATCACATGgtgagagcaa ... ctgatttcagGTAGAGCAGGCGAAGAATGAGCAGGCTGCTCTGAAGAAATAGAATAATATA
EST: gi|116474370|gb|EG516962.1|EG516962
EST:     ATTTGATCCTGATAGATTCGCAAGGGATTGAATACCCTTAACATCACATG                         GTAGAGCAGGCGAAGAATGAGCAGGCTGCTCTGAAGAAATGGAATAATATA
genomic: ATTTGATCCTGATAGATTCGCAAGGGATTGAATACCCTTAACATCACATGgtgagagcaa ... ctgatttcagGTAGAGCAGGCGAAGAATGAGCAGGCTGCTCTGAAGAAATAGAATAATATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttgacgttacttgtactctatataaatatccaatgttttttctctgatttcagGTAGAGCAGGCGAAGAATGAGCAGGCTGCTCTGAAGAAATAGAATAATATAAGTTTGTGTTTAGTTTTTACTTTATGCAGTGAATATACTTTCATGTAAG
                                           ctctgat  putative branch site (score: 4)
                                     ttttttctctgatttc  CT-rich tract
                    tatataaatatccaat  TA-rich tract