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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatagattagagggaactctttttgcttcttatgtaaactagtaggaataaatgacagacttgtatggattcttcagCTAGCAGAAGAAGAAGAGATACGAAGGCTGAGGAAAGAGTTGGTCCCTAAGGCACAACCAATGCCATACTTTGATCGACCATTCATTCCCAAAAG

Basic information

species Arabidopsis thaliana
transcript AT3G01015.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116397427|gb|EG440019.1|EG440019
EST:     AAATAAACCTAGTCGAGCAATACAAAACAGAAAGAGAACGCCAACAAAAG                         CTAGCAGAAGAAGAAGAGATACGAAGGCTGAGGAAAGAGTTGGTCCCTAAG
genomic: AAATAAACCTAGTCGAGCAATACAAAACAGAAAGAGAACGCCAACAAAAGgtaaatagat ... gattcttcagCTAGCAGAAGAAGAAGAGATACGAAGGCTGAGGAAAGAGTTGGTCCCTAAG
EST: gi|116397431|gb|EG440023.1|EG440023
EST:     AAATAAACCTAGTCGAGCAATACAAAACAGAAAGAGAACGCCAACAAAAG                         CTAGCAGAAGAAGAAGAGATACGAAGGCTGAGGAAAGAGTTGGTCCCTAAG
genomic: AAATAAACCTAGTCGAGCAATACAAAACAGAAAGAGAACGCCAACAAAAGgtaaatagat ... gattcttcagCTAGCAGAAGAAGAAGAGATACGAAGGCTGAGGAAAGAGTTGGTCCCTAAG
EST: gi|116397421|gb|EG440013.1|EG440013
EST:     AAATAAACCTAGTCGAGCAATACAAAACAGAAAGAGAACGCCAACAAAAG                         CTAGCAGAAGAAGAAGAGATACGAAGGCTGAGGAAAGAGTTGGTCCCTAAG
genomic: AAATAAACCTAGTCGAGCAATACAAAACAGAAAGAGAACGCCAACAAAAGgtaaatagat ... gattcttcagCTAGCAGAAGAAGAAGAGATACGAAGGCTGAGGAAAGAGTTGGTCCCTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcttcttatgtaaactagtaggaataaatgacagacttgtatggattcttcagCTAGCAGAAGAAGAAGAGATACGAAGGCTGAGGAAAGAGTTGGTCCCTAAGGCACAACCAATGCCATACTTTGATCGACCATTCATTCCCAAAAG
                                               ttcttc  CT-rich tract
       ttatgtaaa  TA-rich tract