1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcagaatttgagacaaatcttgcacataattgagatttatgtatgtttcagtttctcgttatgacctcaactttgaatctacacaagcagagtcttttttgtggatcttgtatgataaaatccagcattgtctcattgtatcagGTTACTGAGAAAATAAACCTAGTCGAGCAATACAAAACAGAAAGAGAACGCCAACAAAAG
species | Arabidopsis thaliana |
transcript | AT3G01015.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCTCCATTCCGACATTCGAGCAGTAGAACGTGCAGAATTTGATTACCAG GTTACTGAGAAAATAAACCTAGTCGAGCAATACAAAACAGAAAGAGAACGCEST: gi|116397431|gb|EG440023.1|EG440023
genomic: AGCTCCATTCCGACATTCGAGCAGTAGAACGTGCAGAATTTGATTACCAGgtcagaattt ... attgtatcagGTTACTGAGAAAATAAACCTAGTCGAGCAATACAAAACAGAAAGAGAACGC
EST: CAGTAGAACGTGCAGAATTTGATTACCAG GTTACTGAGAAAATAAACCTAGTCGAGCAATACAAAACAGAAAGAGAACGCEST: gi|116397422|gb|EG440014.1|EG440014
genomic: CAGTAGAACGTGCAGAATTTGATTACCAGgtcagaattt ... attgtatcagGTTACTGAGAAAATAAACCTAGTCGAGCAATACAAAACAGAAAGAGAACGC
EST: AGCTCCATTCCGACATTCGAGCAGTAGAACGTGCAGAATTTGATTACCAG GTTACTGAGAAAATAAACCTAGTCGAGCAATACAAAACAGAAAGAGAACGCEST: gi|116397421|gb|EG440013.1|EG440013
genomic: AGCTCCATTCCGACATTCGAGCAGTAGAACGTGCAGAATTTGATTACCAGgtcagaattt ... attgtatcagGTTACTGAGAAAATAAACCTAGTCGAGCAATACAAAACAGAAAGAGAACGC
EST: AGCTCCATTCCGACATTCGAGCAGTAGAACGTGCAGAATTTGATTACCAG GTTACTGAGAAAATAAACCTAGTCGAGCAATACAAAACAGAAAGAGAACGC
genomic: AGCTCCATTCCGACATTCGAGCAGTAGAACGTGCAGAATTTGATTACCAGgtcagaattt ... attgtatcagGTTACTGAGAAAATAAACCTAGTCGAGCAATACAAAACAGAAAGAGAACGC
gagtcttttttgtggatcttgtatgataaaatccagcattgtctcattgtatcagGTTACTGAGAAAATAAACCTAGTCGAGCAATACAAAACAGAAAGAGAACGCCAACAAAAG
tctcatt CT-rich tract
ttgtatgataaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagaatttgagacaaatcttgcacataattgagatttatgtatgtttcagtttctcgttatgacctcaactttgaatctacacaagcagagtcttttttgtggatcttgtatgataaaatccagcattgtctcattgtatcagGTTACTGAGAAAATAAACCTAGTCGAGCAATACAAAACAGAAAGAGAACGCCAACAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA