1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAATgtatgtgtattggattgatatatgcagaatctgattttgcgcaatctctcctggttgatgtagtttgacattcttttttgtaacag
species | Arabidopsis thaliana |
transcript | AT3G01015.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAAT AGCTTCGAATCCTCTGCTTCAATGGGAAGTAGAAGATCAACGAAGAAGCAGEST: gi|116397420|gb|EG440012.1|EG440012
genomic: TGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAATgtatgtgtat ... tttgtaacagAGCTTCGAATCCTCTGCTTCAATGGGAAGTAGAAGATCAACGAAGAAGCAG
EST: TGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAAT AGCTTCGAATCCTCTGCTTCAATGGGAAGTAGAAGATCAACGAAGAAGCAGEST: gi|116397430|gb|EG440022.1|EG440022
genomic: TGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAATgtatgtgtat ... tttgtaacagAGCTTCGAATCCTCTGCTTCAATGGGAAGTAGAAGATCAACGAAGAAGCAG
EST: TGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAAT AGCTTCGAATCCTCTGCTTCAATGGGAAGTAGAAGATCAACGAAGAAGCAGEST: gi|116397429|gb|EG440021.1|EG440021
genomic: TGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAATgtatgtgtat ... tttgtaacagAGCTTCGAATCCTCTGCTTCAATGGGAAGTAGAAGATCAACGAAGAAGCAG
EST: TGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAAT AGCTTCGAATCCTCTGCTTCAATGGGAAGTAGAAGATCEST: gi|116397422|gb|EG440014.1|EG440014
genomic: TGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAATgtatgtgtat ... tttgtaacagAGCTTCGAATCCTCTGCTTCAATGGGAAGTAGAAGATC
EST: TGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAAT AGCTTCGAATCCTCTGCTTCAATGGGAAGTAGAAGATCAACGAAGAAGCAGEST: gi|116397433|gb|EG440025.1|EG440025
genomic: TGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAATgtatgtgtat ... tttgtaacagAGCTTCGAATCCTCTGCTTCAATGGGAAGTAGAAGATCAACGAAGAAGCAG
EST: TGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAAT AGCTTCGAATCCTCTGCTTCAATGGGAAGTAGAAGATCAACGAAGAAGCAGEST: gi|116397432|gb|EG440024.1|EG440024
genomic: TGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAATgtatgtgtat ... tttgtaacagAGCTTCGAATCCTCTGCTTCAATGGGAAGTAGAAGATCAACGAAGAAGCAG
EST: TGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGTAGAAGAAAT AGCTTCGAATCCTCTGCTTCAATGGGAAGTAGAAGATCAACGAAGAAGCAGEST: gi|116397434|gb|EG440026.1|EG440026
genomic: TGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAATgtatgtgtat ... tttgtaacagAGCTTCGAATCCTCTGCTTCAATGGGAAGTAGAAGATCAACGAAGAAGCAG
EST: TGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAAT AGCTTCGAATCCTCTGCTTCAATGGGAAGTAGAAGATCAACGAAGAAGCAGEST: gi|116397423|gb|EG440015.1|EG440015
genomic: TGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAATgtatgtgtat ... tttgtaacagAGCTTCGAATCCTCTGCTTCAATGGGAAGTAGAAGATCAACGAAGAAGCAG
EST: TGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAAT AGCTTCGAATCCTCTGCTTCAATGGGAAGTAGAAGATCAACGAAGAAGCAGEST: gi|116397428|gb|EG440020.1|EG440020
genomic: TGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAATgtatgtgtat ... tttgtaacagAGCTTCGAATCCTCTGCTTCAATGGGAAGTAGAAGATCAACGAAGAAGCAG
EST: TGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAAT AGCTCCGAATCCTCTGCTTCAATGGGAAGTAGAAGATCAACGAAGAAGCAG
genomic: TGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAATgtatgtgtat ... tttgtaacagAGCTTCGAATCCTCTGCTTCAATGGGAAGTAGAAGATCAACGAAGAAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTTCAAGTCTCAACTCAAATGGTGGCCGGAGGGGCAGAAGAAATgtatgtgtattggattgatatatgcagaatctgattttgcgcaatctctcctggttgatgtagtttgacattcttttttgtaacag
- - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - AAGAAA