1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtataaactttacaggaaaacatttttcagatgttgtagaatagatttatgattgttggtctaatgtctacgtagGAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATGACGTTGGAGAAAGCAAAAAAGAGAATCCCCATAGCTCAAGGTCTTCCCT
species | Arabidopsis thaliana |
transcript | AT3G01015.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAAGCAGATCAAAGTCACTTCTCTGAAGCCATTTAAACTCAGAACTGAG GAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATGEST: gi|116397420|gb|EG440012.1|EG440012
genomic: AGAAGCAGATCAAAGTCACTTCTCTGAAGCCATTTAAACTCAGAACTGAGgtataaactt ... gtctacgtagGAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATG
EST: AGAAGCAGATCAAAGTCACTTCTCTGAAGCCATTTAAACTCAGAACTGAG GAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATGEST: gi|116397430|gb|EG440022.1|EG440022
genomic: AGAAGCAGATCAAAGTCACTTCTCTGAAGCCATTTAAACTCAGAACTGAGgtataaactt ... gtctacgtagGAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATG
EST: AGAAGCAGATCAAAGTCACTTCTCTGAAGCCATTTAAACTCAGAACTGAG GAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATGEST: gi|116397422|gb|EG440014.1|EG440014
genomic: AGAAGCAGATCAAAGTCACTTCTCTGAAGCCATTTAAACTCAGAACTGAGgtataaactt ... gtctacgtagGAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATG
EST: AGAAGCAGATCAAAGTCACTTCTCTGAAGCCATTTAAACTCAGAACTGAG GAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATGEST: gi|116397433|gb|EG440025.1|EG440025
genomic: AGAAGCAGATCAAAGTCACTTCTCTGAAGCCATTTAAACTCAGAACTGAGgtataaactt ... gtctacgtagGAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATG
EST: AGAAGCAGATCACAGTCACTTCTCTGAAGCCATTTAAACTCAGAACTGAG GAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATGEST: gi|116397432|gb|EG440024.1|EG440024
genomic: AGAAGCAGATCAAAGTCACTTCTCTGAAGCCATTTAAACTCAGAACTGAGgtataaactt ... gtctacgtagGAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATG
EST: AGAAGCAGATCAAAGTCACTTCTCTGAAGCCATTTAAACTCAGAACTGAG GAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATGEST: gi|116397434|gb|EG440026.1|EG440026
genomic: AGAAGCAGATCAAAGTCACTTCTCTGAAGCCATTTAAACTCAGAACTGAGgtataaactt ... gtctacgtagGAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATG
EST: AGAAGCAGATCAAAGTCACTTCTCTGAAGCCATTTAAACTCAGAACTGAG GAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATGEST: gi|116397423|gb|EG440015.1|EG440015
genomic: AGAAGCAGATCAAAGTCACTTCTCTGAAGCCATTTAAACTCAGAACTGAGgtataaactt ... gtctacgtagGAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATG
EST: AGAAGCAGATCAAAGTCACTTCTCTGAAGCCATTTAAACTCAGAACTGAG GAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATGEST: gi|116397428|gb|EG440020.1|EG440020
genomic: AGAAGCAGATCAAAGTCACTTCTCTGAAGCCATTTAAACTCAGAACTGAGgtataaactt ... gtctacgtagGAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATG
EST: AGAAGCAGATCAAAGTCACTTCTCTGAAGCCATTTAAACTCAGAACTGAG GAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATG
genomic: AGAAGCAGATCAAAGTCACTTCTCTGAAGCCATTTAAACTCAGAACTGAGgtataaactt ... gtctacgtagGAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATG
catttttcagatgttgtagaatagatttatgattgttggtctaatgtctacgtagGAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATGACGTTGGAGAAAGCAAAAAAGAGAATCCCCATAGCTCAAGGTCTTCCCT
gtctaat putative branch site (score: 3)
aatagatttatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataaactttacaggaaaacatttttcagatgttgtagaatagatttatgattgttggtctaatgtctacgtagGAACGGGGACGAATGAAAGAAGAAGAGTTTGCAAAGAAGCTACACGAGATGACGTTGGAGAAAGCAAAAAAGAGAATCCCCATAGCTCAAGGTCTTCCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA