1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagctgaagaaccctttcctcttcattaacatactatcataccagatcatttatataactgtttgattttgatatatgactctcggagaaattcacttcaaaaatatagaatatagaatggaacataagcagatgattttaatgtttctctctgttttcagAATCTGGTTAAGCCTCATGTGAAAGATATCACGATACCAGTAGACTTAAAGCTCCATTCCGACATTCGAGCAGTAGAACGTGCAGAATTTGATTACCAG
species | Arabidopsis thaliana |
transcript | AT3G01015.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAGAATCCCCATAGCTCAGGGTCTTCCCTGGACAACTGATGAACCTGAG AATCTGGTTAAGCCTCATGTGAAAGATATCACGATACCAGTAGACTTAAAGEST: gi|116397430|gb|EG440022.1|EG440022
genomic: AGAGAATCCCCATAGCTCAAGGTCTTCCCTGGACAACTGATGAACCTGAGgtgagctgaa ... ctgttttcagAATCTGGTTAAGCCTCATGTGAAAGATATCACGATACCAGTAGACTTAAAG
EST: AGAGAATCCCCATAGCTCAAGGTCTTCCCTGGACAACTGATGAACCTGAG AATCTGGTTAAGCCTCATGTGAAAGATATCACGATACCAGTAGACTTAEST: gi|116397427|gb|EG440019.1|EG440019
genomic: AGAGAATCCCCATAGCTCAAGGTCTTCCCTGGACAACTGATGAACCTGAGgtgagctgaa ... ctgttttcagAATCTGGTTAAGCCTCATGTGAAAGATATCACGATACCAGTAGACTTA
EST: AGAGAATCCCCATAGCTCAAGGTCTTCCCTGGACAACTGATGAACCTGAG AATCTGGTTAAGCCTCATGTGAAAGATATCACGATACCAGTAGACTTAAAGEST: gi|116397422|gb|EG440014.1|EG440014
genomic: AGAGAATCCCCATAGCTCAAGGTCTTCCCTGGACAACTGATGAACCTGAGgtgagctgaa ... ctgttttcagAATCTGGTTAAGCCTCATGTGAAAGATATCACGATACCAGTAGACTTAAAG
EST: AGAGAATCCCCATAGCTCAAGGTCTTCCCTGGACAACTGATGAACCTGAG AATCTGGTTAAGCCTCATGTGAAAGATATCACGATACCAGTAGACTTAAAGEST: gi|116397432|gb|EG440024.1|EG440024
genomic: AGAGAATCCCCATAGCTCAAGGTCTTCCCTGGACAACTGATGAACCTGAGgtgagctgaa ... ctgttttcagAATCTGGTTAAGCCTCATGTGAAAGATATCACGATACCAGTAGACTTAAAG
EST: AGAGAATCCCCATAGCTCAAGGTCTTCCCTGGACAACTGATGAACCTGAG AATCTGGTTAAGCCTCATGTGAAAGATATCACGATACCAGTAEST: gi|116397421|gb|EG440013.1|EG440013
genomic: AGAGAATCCCCATAGCTCAAGGTCTTCCCTGGACAACTGATGAACCTGAGgtgagctgaa ... ctgttttcagAATCTGGTTAAGCCTCATGTGAAAGATATCACGATACCAGTA
EST: AGAGAATCCCCATAGCTCAAGGTCTTCCCTGGACAACTGATGAACCTGAG AATCTGGTTAAGCCTCATGTGAAAGATATCACGATACCAGTAGACTTAAAGEST: gi|116397423|gb|EG440015.1|EG440015
genomic: AGAGAATCCCCATAGCTCAAGGTCTTCCCTGGACAACTGATGAACCTGAGgtgagctgaa ... ctgttttcagAATCTGGTTAAGCCTCATGTGAAAGATATCACGATACCAGTAGACTTAAAG
EST: -GAGAATCCCCATAGCTCAAGGTCTTCCCTGGACAACTGATGAACCTGAG AATCTGGTTAAGCCTCATGTGAAAGATATCACGATACCAGTAGACTTAAAGEST: gi|116397428|gb|EG440020.1|EG440020
genomic: AGAGAATCCCCATAGCTCAAGGTCTTCCCTGGACAACTGATGAACCTGAGgtgagctgaa ... ctgttttcagAATCTGGTTAAGCCTCATGTGAAAGATATCACGATACCAGTAGACTTAAAG
EST: AGAGAATCCCCATAGCTCAAGGTCTTCCCTGGACAACTGATGAACCTGAG AATCTGGTTAAGCCTCATGTGAAAGATATCACGATAC
genomic: AGAGAATCCCCATAGCTCAAGGTCTTCCCTGGACAACTGATGAACCTGAGgtgagctgaa ... ctgttttcagAATCTGGTTAAGCCTCATGTGAAAGATATCACGATAC
tagaatatagaatggaacataagcagatgattttaatgtttctctctgttttcagAATCTGGTTAAGCCTCATGTGAAAGATATCACGATACCAGTAGACTTAAAGCTCCATTCCGACATTCGAGCAGTAGAACGTGCAGAATTTGATTACCAG
ttttaat putative branch site (score: 3)
tgtttctctctgtttt CT-rich tract
atgattttaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctgaagaaccctttcctcttcattaacatactatcataccagatcatttatataactgtttgattttgatatatgactctcggagaaattcacttcaaaaatatagaatatagaatggaacataagcagatgattttaatgtttctctctgttttcagAATCTGGTTAAGCCTCATGTGAAAGATATCACGATACCAGTAGACTTAAAGCTCCATTCCGACATTCGAGCAGTAGAACGTGCAGAATTTGATTACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG