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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGGGACATGAGAACGCTGACTCTTCTTAAGACTTACACCACTGTGGTGCCCGTAAATGCTGTCTCCCTGTCTCCACTTCTCAACCATgtatgcactaatgcttcatgaaattcaatttcgaatcccagaatcagcaaggcatgatgttatctttgtgaatgtttctgctctctcttttag

Basic information

species Arabidopsis thaliana
transcript AT2G46280.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124833510|gb|EH917949.1|EH917949
EST:     CCACTGTGGTGCCCGTAAATGCTGTCTCCCTGTCTCCACTTCTCAACCAT                         GTTGTACTTGGAGGTGGTCAAGATGCATCAG
genomic: CCACTGTGGTGCCCGTAAATGCTGTCTCCCTGTCTCCACTTCTCAACCATgtatgcacta ... tctcttttagGTTGTACTTGGAGGTGGTCAAGATGCATCAG
EST: gi|164037147|gb|ES198660.1|ES198660
EST:     CCACTGTGGTGCCCGTAAATGCTGTCTCCCTGTCTCCACTTCTCAACCAT                         GTTGTACTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACC
genomic: CCACTGTGGTGCCCGTAAATGCTGTCTCCCTGTCTCCACTTCTCAACCATgtatgcacta ... tctcttttagGTTGTACTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACC
EST: gi|164167906|gb|ES161074.1|ES161074
EST:     CCACTTCTCAACCAT                         GTTGTACTTGGNGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCAT
genomic: CCACTTCTCAACCATgtatgcacta ... tctcttttagGTTGTACTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCAT
EST: gi|164069429|gb|ES196091.1|ES196091
EST:     CCACTGTGGTGCCCGTAAATGCTGTCTCCCTGTCTCCACTTCTCAACCAT                         GTTGTACTTGGAGGTGGTCAAGNTGCATCAGC
genomic: CCACTGTGGTGCCCGTAAATGCTGTCTCCCTGTCTCCACTTCTCAACCATgtatgcacta ... tctcttttagGTTGTACTTGGAGGTGGTCAAGATGCATCAGC
EST: gi|124870050|gb|EH954487.1|EH954487
EST:     TCTCCCTGTCTCCACTTCTCAACCAT                         GTTGTACTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCAT
genomic: TCTCCCTGTCTCCACTTCTCAACCATgtatgcacta ... tctcttttagGTTGTACTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTTGGGACATGAGAACGCTGACTCTTCTTAAGACTTACACCACTGTGGTGCCCGTAAATGCTGTCTCCCTGTCTCCACTTCTCAACCATgtatgcactaatgcttcatgaaattcaatttcgaatcccagaatcagcaaggcatgatgttatctttgtgaatgtttctgctctctcttttag

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