1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgcactaatgcttcatgaaattcaatttcgaatcccagaatcagcaaggcatgatgttatctttgtgaatgtttctgctctctcttttagGTTGTACTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGAAAGTTTGAAGCTAAGTTTTACGACAAG
species | Arabidopsis thaliana |
transcript | AT2G46280.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCACTGTGGTGCCCGTAAATGCTGTCTCCCTGTCTCCACTTCTCAACCAT GTTGTACTTGGAGGTGGTCAAGATGCATCAGEST: gi|164037147|gb|ES198660.1|ES198660
genomic: CCACTGTGGTGCCCGTAAATGCTGTCTCCCTGTCTCCACTTCTCAACCATgtatgcacta ... tctcttttagGTTGTACTTGGAGGTGGTCAAGATGCATCAG
EST: CCACTGTGGTGCCCGTAAATGCTGTCTCCCTGTCTCCACTTCTCAACCAT GTTGTACTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCEST: gi|164167906|gb|ES161074.1|ES161074
genomic: CCACTGTGGTGCCCGTAAATGCTGTCTCCCTGTCTCCACTTCTCAACCATgtatgcacta ... tctcttttagGTTGTACTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACC
EST: CCACTTCTCAACCAT GTTGTACTTGGNGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCATEST: gi|164069429|gb|ES196091.1|ES196091
genomic: CCACTTCTCAACCATgtatgcacta ... tctcttttagGTTGTACTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCAT
EST: CCACTGTGGTGCCCGTAAATGCTGTCTCCCTGTCTCCACTTCTCAACCAT GTTGTACTTGGAGGTGGTCAAGNTGCATCAGCEST: gi|124870050|gb|EH954487.1|EH954487
genomic: CCACTGTGGTGCCCGTAAATGCTGTCTCCCTGTCTCCACTTCTCAACCATgtatgcacta ... tctcttttagGTTGTACTTGGAGGTGGTCAAGATGCATCAGC
EST: TCTCCCTGTCTCCACTTCTCAACCAT GTTGTACTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCAT
genomic: TCTCCCTGTCTCCACTTCTCAACCATgtatgcacta ... tctcttttagGTTGTACTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCAT
cagaatcagcaaggcatgatgttatctttgtgaatgtttctgctctctcttttagGTTGTACTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGAAAGTTTGAAGCTAAGTTTTACGACAAG
tgtttctgctctctct CT-rich tract
ttatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcactaatgcttcatgaaattcaatttcgaatcccagaatcagcaaggcatgatgttatctttgtgaatgtttctgctctctcttttagGTTGTACTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGAAAGTTTGAAGCTAAGTTTTACGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC