1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagttgtacattcctagctgaattactacttacgttttagccaacttcttgtatgtgttaaaaggaaattgtttgtttgatgcaattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGATCAATAGAGCTGTTTGGGGTCCCCTGAACCAAACTATTGTTAGTGGTGG
species | Arabidopsis thaliana |
transcript | AT2G46280.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGAEST: gi|86043194|gb|DR338949.1|DR338949
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
EST: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGEST: gi|86043167|gb|DR338922.1|DR338922
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATG
EST: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGA-GAGGAEST: gi|86043174|gb|DR338929.1|DR338929
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
EST: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCEST: gi|86043163|gb|DR338918.1|DR338918
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCC
EST: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGEST: gi|86043168|gb|DR338923.1|DR338923
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAG
EST: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCG-AAGATCCTGAGGAAC AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGAEST: gi|125237721|gb|EL251806.1|EL251806
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
EST: CTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGEST: gi|86043181|gb|DR338936.1|DR338936
genomic: CTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAG
EST: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC AGGATGCTGAGTCTGTGCTTEST: gi|86043197|gb|DR338952.1|DR338952
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTT
EST: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAEST: gi|86043188|gb|DR338943.1|DR338943
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGA
EST: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC AGGATGCTGAGTCTGTGCEST: gi|86043173|gb|DR338928.1|DR338928
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGC
EST: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC AGGATGCTGAGTCTGTGCTTGTCCTTTCATTGTCCTGATGGEST: gi|86043189|gb|DR338944.1|DR338944
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTT-CATTGTCCTGATGG
EST: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGAEST: gi|86043164|gb|DR338919.1|DR338919
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
EST: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGNG-AEST: gi|86043199|gb|DR338954.1|DR338954
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
EST: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCG-AAGATCCTGAGGAAC AGGATGCTGAGTCTGTGCTTGTCCTTCAEST: gi|86043196|gb|DR338951.1|DR338951
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCA
EST: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGAEST: gi|124808757|gb|EH894713.1|EH894713
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
EST: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC AGGATGCTGAGTCEST: gi|86043169|gb|DR338924.1|DR338924
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTC
EST: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGAEST: gi|86043171|gb|DR338926.1|DR338926
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
EST: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC AGGATGCTGAGTCTGTGCEST: gi|86043192|gb|DR338947.1|DR338947
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGC
EST: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAANATCCTGAGGAAC AGGATGCTGAGTCTGTEST: gi|86043195|gb|DR338950.1|DR338950
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGT
EST: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGAEST: gi|86043177|gb|DR338932.1|DR338932
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
EST: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTC-TGATGGAAEST: gi|164125798|gb|ES068248.1|ES068248
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAA
EST: GCGTATTGCGGAAGATCCTGAGGAAC AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGAEST: gi|86043162|gb|DR338917.1|DR338917
genomic: GCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
EST: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC AGGATGCTGAGTCTGTGC
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGC
agccaacttcttgtatgtgttaaaaggaaattgtttgtttgatgcaattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGATCAATAGAGCTGTTTGGGGTCCCCTGAACCAAACTATTGTTAGTGGTGG
gtttgat putative branch site (score: 5)
aaattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgtacattcctagctgaattactacttacgttttagccaacttcttgtatgtgttaaaaggaaattgtttgtttgatgcaattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGATCAATAGAGCTGTTTGGGGTCCCCTGAACCAAACTATTGTTAGTGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG