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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTTGATTTCCTAGGGTTTTTGCACTTCTTCCTCGTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaagaaagccgttttccgtaatcgtttcttcaattatttttcttgtcttttgattgattcgatttcgtatctgtttcaaag

Basic information

species Arabidopsis thaliana
transcript AT2G46280.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86043183|gb|DR338938.1|DR338938
EST:     CTCGTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCYGATCCTGATGAAGGG
genomic: CTCGTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043170|gb|DR338925.1|DR338925
EST:     GTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043194|gb|DR338949.1|DR338949
EST:     GTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043180|gb|DR338935.1|DR338935
EST:     TCGTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: TCGTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|116446560|gb|EG489152.1|EG489152
EST:     GTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043176|gb|DR338931.1|DR338931
EST:     GTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043186|gb|DR338941.1|DR338941
EST:     AGGGTTTTTGCACTTCTTCCTCGTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: AGGGTTTTTGCACTTCTTCCTCGTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043190|gb|DR338945.1|DR338945
EST:     TTCCTCGTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: TTCCTCGTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043167|gb|DR338922.1|DR338922
EST:     GTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043174|gb|DR338929.1|DR338929
EST:     GTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043163|gb|DR338918.1|DR338918
EST:     GTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACAGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043168|gb|DR338923.1|DR338923
EST:     GTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043165|gb|DR338920.1|DR338920
EST:     GTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAANAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043175|gb|DR338930.1|DR338930
EST:     GTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043181|gb|DR338936.1|DR338936
EST:     GTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043197|gb|DR338952.1|DR338952
EST:     CTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: CTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043188|gb|DR338943.1|DR338943
EST:     CGTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: CGTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043173|gb|DR338928.1|DR338928
EST:     GCACTTCTTCCTCGTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GCACTTCTTCCTCGTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043172|gb|DR338927.1|DR338927
EST:     TTCCTCGTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAATGG
genomic: TTCCTCGTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043189|gb|DR338944.1|DR338944
EST:     TTCCTCGTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: TTCCTCGTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043166|gb|DR338921.1|DR338921
EST:     GTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043187|gb|DR338942.1|DR338942
EST:     CTTCCTCGTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: CTTCCTCGTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|116460408|gb|EG503000.1|EG503000
EST:     CTCGTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: CTCGTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043178|gb|DR338933.1|DR338933
EST:     GTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAANAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043164|gb|DR338919.1|DR338919
EST:     TCGTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: TCGTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043199|gb|DR338954.1|DR338954
EST:     CTTCCTCGTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: CTTCCTCGTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043169|gb|DR338924.1|DR338924
EST:     GTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043171|gb|DR338926.1|DR338926
EST:     GCACTTCTTCCTCGTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GCACTTCTTCCTCGTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043195|gb|DR338950.1|DR338950
EST:     GTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043182|gb|DR338937.1|DR338937
EST:     GTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|116465368|gb|EG507960.1|EG507960
EST:     CTCGTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: CTCGTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043198|gb|DR338953.1|DR338953
EST:     GTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043177|gb|DR338932.1|DR338932
EST:     GTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043191|gb|DR338946.1|DR338946
EST:     GTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACAGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043161|gb|DR338916.1|DR338916
EST:     GTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043184|gb|DR338939.1|DR338939
EST:     GTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|86043193|gb|DR338948.1|DR338948
EST:     GTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: GTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
EST: gi|164111106|gb|ES082314.1|ES082314
EST:     GTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCC
genomic: GTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCC
EST: gi|86043162|gb|DR338917.1|DR338917
EST:     CTTCCTCGTCGTCTCTCTCGTCTTCAAGTGAACAG                         ATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG
genomic: CTTCCTCGTCGTCTCTCTCGTCTTCAAGTGAACAGgtgaagaaga ... tgtttcaaagATTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGG