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gtatttcaatttttcttaaggccttacttgtgtattaatttctctcttttaaggttatgaactaaaccttatgtggtgctactgccattgttactagACGGGAAAATTGCTCAAGCAATCAGATGAGGAAGTGGGTCACAAGAAGGACATTACATCGCTCTGCAAAGCAGCTGATGACTCTCACTTCCTTACAGGTT
species | Arabidopsis thaliana |
transcript | AT2G46280.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTATTGTTAGTGGTGGTGAAGATAAAGTTATCAGAATCNGGGATGCCGAG ACGGGAAAATTGCTCAAGCAATCAGATGAGGAAGTGGGTCACAEST: gi|124814958|gb|EH899824.1|EH899824
genomic: CTATTGTTAGTGGTGGTGAAGATAAAGTTATCAGAATCTGGGATGCCGAGgtatttcaat ... ttgttactagACGGGAAAATTGCTCAAGCAATCAGATGAGGAAGTGGGTCACA
EST: TGGTGGTGAAGATAAAGTTATCAGAATCTGGGATGCCGAG ACGGGAAAATTGCTCAAGCAATCAGATGAGGAAGTGGGTCACAAGAAGGACEST: gi|164128235|gb|ES092075.1|ES092075
genomic: TGGTGGTGAAGATAAAGTTATCAGAATCTGGGATGCCGAGgtatttcaat ... ttgttactagACGGGAAAATTGCTCAAGCAATCAGATGAGGAAGTGGGTCACAAGAAGGAC
EST: CTATTGTTAGTGGTGGTGAAGATAAAGTTATCAGAATCTGGGATGCCGAG ACGGGAAAATTGCTCAAGCAATCAGATGAGGAAGTGGGTCACAEST: gi|86043189|gb|DR338944.1|DR338944
genomic: CTATTGTTAGTGGTGGTGAAGATAAAGTTATCAGAATCTGGGATGCCGAGgtatttcaat ... ttgttactagACGGGAAAATTGCTCAAGCAATCAGATGAGGAAGTGGGTCACA
EST: CTATTGTTAGTGGTGGTGAAGATAAAGTTATCAGAATCTGGGATGCCGAG ACGGGAAAATTGEST: gi|86043164|gb|DR338919.1|DR338919
genomic: CTATTGTTAGTGGTGGTGAAGATAAAGTTATCAGAATCTGGGATGCCGAGgtatttcaat ... ttgttactagACGGGAAAATTG
EST: CTATTGNTAGTGGTGGTGAAGATAAAGT-ATCAGAATCTGGGATGCCGAG ACNGGAAA-TTGCTCA-GCAATCAGATGAGGGAGTGGG
genomic: CTATTGTTAGTGGTGGTGAAGATAAAGTTATCAGAATCTGGGATGCCGAGgtatttcaat ... ttgttactagACGGGAAAATTGCTCAAGCAATCAGATGAGGAAGTGGG
tctcttttaaggttatgaactaaaccttatgtggtgctactgccattgttactagACGGGAAAATTGCTCAAGCAATCAGATGAGGAAGTGGGTCACAAGAAGGACATTACATCGCTCTGCAAAGCAGCTGATGACTCTCACTTCCTTACAGGTT
aactaaa putative branch site (score: 2)
ttatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttcaatttttcttaaggccttacttgtgtattaatttctctcttttaaggttatgaactaaaccttatgtggtgctactgccattgttactagACGGGAAAATTGCTCAAGCAATCAGATGAGGAAGTGGGTCACAAGAAGGACATTACATCGCTCTGCAAAGCAGCTGATGACTCTCACTTCCTTACAGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT