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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATTCGAAAGgtaaagatagtttgttgtatcagtgctcttgtttatatccatggctgaagtctttggatattatcaacttttttctatgtttgtttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G46230.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G46230.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv15s0046g02690.t01 (Vitis vinifera), 5'ss of exon 7
CATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATTCGAAAGgtaaagatagtttgttg-tatcagtgctcttgtttatatccatggctgaagtctttggatattatcaact--tttttctatgtttgtttgcag---------------------
|||||||||| ||| || |||||||| ||| ||||||| |||||||||||||| |||||||| ||   ||| || |     ||  |||| | ||  |  ||  | ||||      ||||| |  |    |   || |  | |  |    |                     
CATAAATGCTACATTGTTGCTACATGCGATCGAGACTTGAAGCGAAGGATTCGCAAGgtaaaaatgaattgatgatgctcatga-cttgataattactttgcatcaagttccaatatatttttgataggtgcatcaagttctaataaatgaaatttcttttcaatgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084884|gb|DR380643.1|DR380643
EST:     GCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATTCGAAAG                         ATTCCTGGTGTGCCCATCATGTATGTGACTAATCGCAAGTACTCAATAGAG
genomic: GCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATTCGAAAGgtaaagatag ... ttgtttgcagATTCCTGGTGTGCCCATCATGTATGTGACTAATCGCAAGTACTCAATAGAG
EST: gi|164010362|gb|ES142274.1|ES142274
EST:     GAGACTTAAAGCGAAGGATTCGAAAG                         ATTCCTGGTGTGCCCATCATGTATGTGACTAATCGCAAGTACTC
genomic: GAGACTTAAAGCGAAGGATTCGAAAGgtaaagatag ... ttgtttgcagATTCCTGGTGTGCCCATCATGTATGTGACTAATCGCAAGTACTC
EST: gi|164129558|gb|ES129019.1|ES129019
EST:     AGACTTAAAGCGAAGGATTCGAAAG                         ATTCCTGGTGTGCCCATCATGTATGTGACTAATCGCAAGTACTC
genomic: AGACTTAAAGCGAAGGATTCGAAAGgtaaagatag ... ttgtttgcagATTCCTGGTGTGCCCATCATGTATGTGACTAATCGCAAGTACTC
EST: gi|164190436|gb|ES103627.1|ES103627
EST:     AGACTTAAAGCGAAGGATTCGAAAG                         ATTCCTGGTGTGCCCATCATGTATGTGACTAAATCGCAAGTACTC
genomic: AGACTTAAAGCGAAGGATTCGAAAGgtaaagatag ... ttgtttgcagATTCCTGGTGTGCCCATCATGTATGTGACTAA-TCGCAAGTACTC
EST: gi|47829180|gb|CK118864.1|CK118864
EST:     GCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATTCGAAAG                         ATTCCTGGTGTGCCCATCATGTATGTGACTAATCGCAAGTACTCAATAGAG
genomic: GCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATTCGAAAGgtaaagatag ... ttgtttgcagATTCCTGGTGTGCCCATCATGTATGTGACTAATCGCAAGTACTCAATAGAG
EST: gi|164186213|gb|ES047993.1|ES047993
EST:     ACATGTGATAGAGACTTAAAGCGAAGGATTCGAAAG                         ATTCCTGGTGTGCCCATCATGTATGTGACTAATCGCAAGTACTCAATAGAG
genomic: ACATGTGATAGAGACTTAAAGCGAAGGATTCGAAAGgtaaagatag ... ttgtttgcagATTCCTGGTGTGCCCATCATGTATGTGACTAATCGCAAGTACTCAATAGAG
EST: gi|163975383|gb|ES020473.1|ES020473
EST:     ACATGTGATAGAGACTTAAAGCGAAGGATTCGAAAG                         ATTCCTGGTGTGCCCATTCATGTATGTGACTAATCGCAAGTACTCAATAGA
genomic: ACATGTGATAGAGACTTAAAGCGAAGGATTCGAAAGgtaaagatag ... ttgtttgcagATTCCTGGTGTGCCCAT-CATGTATGTGACTAATCGCAAGTACTCAATAGA
EST: gi|86080730|gb|DR376487.1|DR376487
EST:     GCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATTCGAAAG                         ATTCCTGGTGTGCCCATCATGTATGTGACTAATCGCAAGTACTCAATAGAG
genomic: GCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATTCGAAAGgtaaagatag ... ttgtttgcagATTCCTGGTGTGCCCATCATGTATGTGACTAATCGCAAGTACTCAATAGAG
EST: gi|47828370|gb|CK118054.1|CK118054
EST:     GCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATTCGAAAG                         ATTCCTGGTGTGCCCATCATGTATGTGACTAATCGCAAGTACTCAATAGAG
genomic: GCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATTCGAAAGgtaaagatag ... ttgtttgcagATTCCTGGTGTGCCCATCATGTATGTGACTAATCGCAAGTACTCAATAGAG