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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATTgtgagttacttaaagattttgataggtctatataggttctctctcttgttaaccacctgtaattgtttctggtttgaag

Basic information

species Arabidopsis thaliana
transcript AT2G46230.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86051132|gb|DR346887.1|DR346887
EST:     ATCGATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATT                         GCACTCCTTGTATCACGGATTGTGTCATGGCTGAGTTAGAGAAGTTAGGTC
genomic: ATCGATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATTgtgagttact ... tggtttgaagGCACTCCTTGTATCACGGATTGTGTCATGGCTGAGTTAGAGAAGTTAGGTC
EST: gi|86051135|gb|DR346890.1|DR346890
EST:     ATCGATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATT                         GCACTCCTTGTATCACGGATTGTGTCATGGCTGAGTTAGAGAAGTTAGGTC
genomic: ATCGATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATTgtgagttact ... tggtttgaagGCACTCCTTGTATCACGGATTGTGTCATGGCTGAGTTAGAGAAGTTAGGTC
EST: gi|86051133|gb|DR346888.1|DR346888
EST:     ATCGATCTTGAGAAGGGA-TGAGAGACTGTCTGTACGCAAATT                         GCACTCCTTGTATCACGGATTGTGTCATGGCTGAGTTAGAG
genomic: ATCGATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATTgtgagttact ... tggtttgaagGCACTCCTTGTATCACGGATTGTGTCATGGCTGAGTTAGAG
EST: gi|86051134|gb|DR346889.1|DR346889
EST:     ATCGATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATT                         GCACTCCTTGTATCACGGATTGTGTCATGGCTGAGTTAGAGAAGTTAGGTC
genomic: ATCGATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATTgtgagttact ... tggtttgaagGCACTCCTTGTATCACGGATTGTGTCATGGCTGAGTTAGAGAAGTTAGGTC
EST: gi|86080730|gb|DR376487.1|DR376487
EST:     WTCGATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATT                         GCACTCCTTGTATCACGGATTGTGTCATGGCTGAGTTAGAGAAGTTAGGTC
genomic: ATCGATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATTgtgagttact ... tggtttgaagGCACTCCTTGTATCACGGATTGTGTCATGGCTGAGTTAGAGAAGTTAGGTC
EST: gi|47828370|gb|CK118054.1|CK118054
EST:     ATCGATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATT                         GCACTCCTTGTATCACGGATTGTGTCATGGCTGAGTTAGAGAAGTTAGGTC
genomic: ATCGATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATTgtgagttact ... tggtttgaagGCACTCCTTGTATCACGGATTGTGTCATGGCTGAGTTAGAGAAGTTAGGTC