1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtaaacgattcgtcttccttcaaatttgatccttttttaaagagattcttagttttgtttttatttatatagTTACAAGGAAGAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCCGAGAAACGT
species | Arabidopsis thaliana |
transcript | AT2G46230.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAAAAGTTTGCTGTCGTGAAGAAGATGATTAGCCACAAAGCTTTGAAGCA TTACAAGGAAGAGGTTCTGAATCCAAACAAGAEST: gi|86051132|gb|DR346887.1|DR346887
genomic: CAAAAGTTTGCTGTCGTGAAGAAGATGATTAGCCACAAAGCTTTGAAGCAgtgagtaaac ... atttatatagTTACAAGGAAGAGGTTCTGAATCCAAACAAGA
EST: CAAAAGTTTGCTGTCGTGAAGAAGATGATTAGCCACAAAGCTTTGAAGCA TTACAAGGAAGAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCCEST: gi|86051135|gb|DR346890.1|DR346890
genomic: CAAAAGTTTGCTGTCGTGAAGAAGATGATTAGCCACAAAGCTTTGAAGCAgtgagtaaac ... atttatatagTTACAAGGAAGAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCC
EST: CAAAAGTTTGCTGTCGTGAAGAAGATGATTAGCCACAAAGCTTTGAAGCA TTACAAGGAAGAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCCEST: gi|86051133|gb|DR346888.1|DR346888
genomic: CAAAAGTTTGCTGTCGTGAAGAAGATGATTAGCCACAAAGCTTTGAAGCAgtgagtaaac ... atttatatagTTACAAGGAAGAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCC
EST: CAAAAGTTTGCTGTCGTGAAGAAGATGATTAGCCACAAAGCTTTGAAGCA TTACAAGGAAGAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCCEST: gi|86051134|gb|DR346889.1|DR346889
genomic: CAAAAGTTTGCTGTCGTGAAGAAGATGATTAGCCACAAAGCTTTGAAGCAgtgagtaaac ... atttatatagTTACAAGGAAGAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCC
EST: CAAAAGTTTGCTGTCGTGAAGAAGATGATTAGCCACAAAGCTTTGAAGCA TTACAAGGAAGAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCCEST: gi|47828370|gb|CK118054.1|CK118054
genomic: CAAAAGTTTGCTGTCGTGAAGAAGATGATTAGCCACAAAGCTTTGAAGCAgtgagtaaac ... atttatatagTTACAAGGAAGAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCC
EST: CAAAAGTTTGCTGTCGTGAAGAAGATGATTAGCCACAAAGCTTTGAAGCA TTACAAGGAAGAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCCEST: gi|164231305|gb|ES158777.1|ES158777
genomic: CAAAAGTTTGCTGTCGTGAAGAAGATGATTAGCCACAAAGCTTTGAAGCAgtgagtaaac ... atttatatagTTACAAGGAAGAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCC
EST: CAAAGCTTTGAAGCA TTACAAGGAAGAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCC
genomic: CAAAGCTTTGAAGCAgtgagtaaac ... atttatatagTTACAAGGAAGAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCC
cttcaaatttgatccttttttaaagagattcttagttttgtttttatttatatagTTACAAGGAAGAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCCGAGAAACGT
atttgat putative branch site (score: 5)
ttttgtttttattt putative PPT
ttttttaaagagattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaaacgattcgtcttccttcaaatttgatccttttttaaagagattcttagttttgtttttatttatatagTTACAAGGAAGAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCCGAGAAACGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG