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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatacatcgttcccggcttgttgaactttgtattcaagactctgaaatgatataccgatgctctggtcccatggttcttggtgtatacattttatcttttgtatgtttctgtaatattcatttctcataatatacagCATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATTCGAAAG

Basic information

species Arabidopsis thaliana
transcript AT2G46230.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G46230.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv15s0046g02690.t01 (Vitis vinifera), 3'ss of exon 6
gtaatacatcgttcccggcttgttgaactttgtattcaagactctgaaatgatataccgatgctctggtcccatggttcttggtgtatac-attttatcttttgtatgtttc-tgtaatattcatttctcataatatacagCATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATTCGAAAG
                                         || || |     ||  |  |      |||| |       || | | | | | | |    || | |||  |  |||       ||   |  |   | |||||||||||||| ||| || |||||||| ||| ||||||| |||||||||||||| |||
-----------------------------------------ctatgcagctgaatgtcattataactgtccaaattgctctgttatcttctactatcctcttcgcatgagtaatgtgtgtactatactttgtttaaaacagCATAAATGCTACATTGTTGCTACATGCGATCGAGACTTGAAGCGAAGGATTCGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084884|gb|DR380643.1|DR380643
EST:     TRCMCAWAGGGACATMTGCTGATGACTGTCTCGTTGACAGAGTTACTCAG                         CATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATT
genomic: TACACAAAGGGACATATGCTGATGACTGTCTCGTTGACAGAGTTACTCAGgtaatacatc ... taatatacagCATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATT
EST: gi|47829180|gb|CK118864.1|CK118864
EST:     TACACAAAGGGACATATGCTGATGACTGTCTCGTTGACAGAGTTACTCAG                         CATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATT
genomic: TACACAAAGGGACATATGCTGATGACTGTCTCGTTGACAGAGTTACTCAGgtaatacatc ... taatatacagCATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATT
EST: gi|86080730|gb|DR376487.1|DR376487
EST:     TACACAAAGGGACATATGCTGATGACTGTCTCGTTGACAGAGTTACTCAG                         CATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATT
genomic: TACACAAAGGGACATATGCTGATGACTGTCTCGTTGACAGAGTTACTCAGgtaatacatc ... taatatacagCATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATT
EST: gi|47828370|gb|CK118054.1|CK118054
EST:     TACACAAAGGGACATATGCTGATGACTGTCTCGTTGACAGAGTTACTCAG                         CATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATT
genomic: TACACAAAGGGACATATGCTGATGACTGTCTCGTTGACAGAGTTACTCAGgtaatacatc ... taatatacagCATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatacattttatcttttgtatgtttctgtaatattcatttctcataatatacagCATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATTCGAAAG
                                      tttctcat  CT-rich tract
                             taatattcatttctca  TA-rich tract