1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATTGCGAAAGATCCTCACTTCGAAAGACTACCTTGTATACACAAAGGGACATATGCTGATGACTGTCTCGTTGACAGAGTTACTCAGgtaatacatcgttcccggcttgttgaactttgtattcaagactctgaaatgatataccgatgctctggtcccatggttcttggtgtatacattttatcttttgtatgtttctgtaatattcatttctcataatatacag
species | Arabidopsis thaliana |
transcript | AT2G46230.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TRCMCAWAGGGACATMTGCTGATGACTGTCTCGTTGACAGAGTTACTCAG CATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATTEST: gi|47829180|gb|CK118864.1|CK118864
genomic: TACACAAAGGGACATATGCTGATGACTGTCTCGTTGACAGAGTTACTCAGgtaatacatc ... taatatacagCATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATT
EST: TACACAAAGGGACATATGCTGATGACTGTCTCGTTGACAGAGTTACTCAG CATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATTEST: gi|86080730|gb|DR376487.1|DR376487
genomic: TACACAAAGGGACATATGCTGATGACTGTCTCGTTGACAGAGTTACTCAGgtaatacatc ... taatatacagCATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATT
EST: TACACAAAGGGACATATGCTGATGACTGTCTCGTTGACAGAGTTACTCAG CATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATTEST: gi|47828370|gb|CK118054.1|CK118054
genomic: TACACAAAGGGACATATGCTGATGACTGTCTCGTTGACAGAGTTACTCAGgtaatacatc ... taatatacagCATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATT
EST: TACACAAAGGGACATATGCTGATGACTGTCTCGTTGACAGAGTTACTCAG CATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATT
genomic: TACACAAAGGGACATATGCTGATGACTGTCTCGTTGACAGAGTTACTCAGgtaatacatc ... taatatacagCATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTGCGAAAGATCCTCACTTCGAAAGACTACCTTGTATACACAAAGGGACATATGCTGATGACTGTCTCGTTGACAGAGTTACTCAGgtaatacatcgttcccggcttgttgaactttgtattcaagactctgaaatgatataccgatgctctggtcccatggttcttggtgtatacattttatcttttgtatgtttctgtaatattcatttctcataatatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT