1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCTCGCCAATCCATCACTGATAAGTTCCCGACAGTGCATCCTTTAGCTATAGACCTTATCGAGAAGATGTTAACATTTGATCCTAGACGGAGAATCACAGgttagtccctaacctctataccatttttaacttgcaaaataactggaattgcttgtacggatcattccaaaatcccgaaaaaagattcaatctagtgaaggaataataataatgagttcttggttatttaagagttagttagtagtcatcacctcttattgattcttgattctcgattcttgattcag
species | Arabidopsis thaliana |
transcript | AT2G43790.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGAGAATCACAG TTTTAGACGCATTGGCCCATCCATACCTGAACTCGTTGCACGACATAAGCGEST: gi|125048367|gb|EL120636.1|EL120636
genomic: GGAGAATCACAGgttagtccct ... cttgattcagTTTTAGACGCATTGGCCCATCCATACCTGAACTCGTTGCACGACATAAGCG
EST: AGACCTTATCGAGAAGATGTTAACATTTGATCCTAGACGGAGAATCACAG TTTTAGGCGCATTGGCCCATCCATA
genomic: AGACCTTATCGAGAAGATGTTAACATTTGATCCTAGACGGAGAATCACAGgttagtccct ... cttgattcagTTTTAGACGCATTGGCCCATCCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCGCCAATCCATCACTGATAAGTTCCCGACAGTGCATCCTTTAGCTATAGACCTTATCGAGAAGATGTTAACATTTGATCCTAGACGGAGAATCACAGgttagtccctaacctctataccatttttaacttgcaaaataactggaattgcttgtacggatcattccaaaatcccgaaaaaagattcaatctagtgaaggaataataataatgagttcttggttatttaagagttagttagtagtcatcacctcttattgattcttgattctcgattcttgattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA