1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttttgagttttgagattgtttgttgacctatataactcgacttgaaaacggggactaattgaactccatttcacttgtctctttgtgcagTATTTTCTTTACCAGATCCTCCGTGGATTGAAATACATTCACTCTGCAAATGTGCTTCACAGGGATTTGAAACCAAGTAATCTCCTCCTGAACGCAAACT
species | Arabidopsis thaliana |
transcript | AT2G43790.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCATCAAATCATTCGGTCAAATCAAGCATTATCCGAAGAACATTGCCAG TATTTTCTTTACCAGATCCTCCGTGGATTGAAATACATTCACTCTGCAAATEST: gi|124705658|gb|EH797060.1|EH797060
genomic: TCCATCAAATCATTCGGTCAAATCAAGCATTATCCGAAGAACATTGCCAGgttttgagtt ... ctttgtgcagTATTTTCTTTACCAGATCCTCCGTGGATTGAAATACATTCACTCTGCAAAT
EST: TCCATCAAATCATTCGGTCAAATCAAGCATTATCCGAAGAACATTGCCAG TATTTTCTTTACCAGAEST: gi|124736210|gb|EH827612.1|EH827612
genomic: TCCATCAAATCATTCGGTCAAATCAAGCATTATCCGAAGAACATTGCCAGgttttgagtt ... ctttgtgcagTATTTTCTTTACCAGA
EST: TCCATCAAATCATTCGGTCAAATCAAGCATTATCCGAAGAACATTGCCAG TATTTTCTTTACCAGATCCTCCG
genomic: TCCATCAAATCATTCGGTCAAATCAAGCATTATCCGAAGAACATTGCCAGgttttgagtt ... ctttgtgcagTATTTTCTTTACCAGATCCTCCG
ctcgacttgaaaacggggactaattgaactccatttcacttgtctctttgtgcagTATTTTCTTTACCAGATCCTCCGTGGATTGAAATACATTCACTCTGCAAATGTGCTTCACAGGGATTTGAAACCAAGTAATCTCCTCCTGAACGCAAACT
gactaat putative branch site (score: 2)
ctccatttcacttgtc putative PPT
taattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttgagttttgagattgtttgttgacctatataactcgacttgaaaacggggactaattgaactccatttcacttgtctctttgtgcagTATTTTCTTTACCAGATCCTCCGTGGATTGAAATACATTCACTCTGCAAATGTGCTTCACAGGGATTTGAAACCAAGTAATCTCCTCCTGAACGCAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC