1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGATGTTTGGTCTGTAGGCTGTATTTTCATGGAGTTAATGGACCGTAAGCCACTCTTCCCTGGACGAGATCATGTCCATCAGCTTCGCTTGCTCATGGAGgtaagtagtaacccttctttgacccaaaaataagctttgaagcactaaagaaacagaccgagaccattttctttttgcag
species | Arabidopsis thaliana |
transcript | AT2G43790.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCATGTCCATCAGCTTCGCTTGCTCATGGAG CTCATAGGAACTCCATCAGAAGAAGAGEST: gi|124825878|gb|EH910744.1|EH910744
genomic: TCATGTCCATCAGCTTCGCTTGCTCATGGAGgtaagtagta ... ctttttgcagCTCATAGGAACTCCATCAGAAGAAGAG
EST: CACTCTTCCCTGGACGAGATCATGTCCATCAGCTTCGCTTGCTCATGGAG CTCATAGGAACTEST: gi|124942594|gb|EL018847.1|EL018847
genomic: CACTCTTCCCTGGACGAGATCATGTCCATCAGCTTCGCTTGCTCATGGAGgtaagtagta ... ctttttgcagCTCATAGGAACT
EST: CGCTTGCTCATGGAG CTCATAGGAACTCCATCAGAAGAAGAGCTCGAGTTCTTGAACGAAAACGCA
genomic: CGCTTGCTCATGGAGgtaagtagta ... ctttttgcagCTCATAGGAACTCCATCAGAAGAAGAGCTCGAGTTCTTGAACGAAAACGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATGTTTGGTCTGTAGGCTGTATTTTCATGGAGTTAATGGACCGTAAGCCACTCTTCCCTGGACGAGATCATGTCCATCAGCTTCGCTTGCTCATGGAGgtaagtagtaacccttctttgacccaaaaataagctttgaagcactaaagaaacagaccgagaccattttctttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA