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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtccctaacctctataccatttttaacttgcaaaataactggaattgcttgtacggatcattccaaaatcccgaaaaaagattcaatctagtgaaggaataataataatgagttcttggttatttaagagttagttagtagtcatcacctcttattgattcttgattctcgattcttgattcagTTTTAGACGCATTGGCCCATCCATACCTGAACTCGTTGCACGACATAAGCGATGAGCCAGAGTGTACAATACCTTTCAACTTTGATTTTGAAAACCATGC

Basic information

species Arabidopsis thaliana
transcript AT2G43790.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125266833|gb|EL280918.1|EL280918
EST:     GGAGAATCACAG                         TTTTAGACGCATTGGCCCATCCATACCTGAACTCGTTGCACGACATAAGCG
genomic: GGAGAATCACAGgttagtccct ... cttgattcagTTTTAGACGCATTGGCCCATCCATACCTGAACTCGTTGCACGACATAAGCG
EST: gi|125048367|gb|EL120636.1|EL120636
EST:     AGACCTTATCGAGAAGATGTTAACATTTGATCCTAGACGGAGAATCACAG                         TTTTAGGCGCATTGGCCCATCCATA
genomic: AGACCTTATCGAGAAGATGTTAACATTTGATCCTAGACGGAGAATCACAGgttagtccct ... cttgattcagTTTTAGACGCATTGGCCCATCCATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttagttagtagtcatcacctcttattgattcttgattctcgattcttgattcagTTTTAGACGCATTGGCCCATCCATACCTGAACTCGTTGCACGACATAAGCGATGAGCCAGAGTGTACAATACCTTTCAACTTTGATTTTGAAAACCATGC
                                           ttctt  CT-rich tract
                      ttattgatt  TA-rich tract