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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagtaacccttctttgacccaaaaataagctttgaagcactaaagaaacagaccgagaccattttctttttgcagCTCATAGGAACTCCATCAGAAGAAGAGCTCGAGTTCTTGAACGAAAACGCAAAGCGATACATAAGACAGCTTCCACCTTATCCTCGCCAATCCATCACTG

Basic information

species Arabidopsis thaliana
transcript AT2G43790.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163988491|gb|ES205310.1|ES205310
EST:     TCATGTCCATCAGCTTCGCTTGCTCATGGAG                         CTCATAGGAACTCCATCAGAAGAAGAG
genomic: TCATGTCCATCAGCTTCGCTTGCTCATGGAGgtaagtagta ... ctttttgcagCTCATAGGAACTCCATCAGAAGAAGAG
EST: gi|124825878|gb|EH910744.1|EH910744
EST:     CACTCTTCCCTGGACGAGATCATGTCCATCAGCTTCGCTTGCTCATGGAG                         CTCATAGGAACT
genomic: CACTCTTCCCTGGACGAGATCATGTCCATCAGCTTCGCTTGCTCATGGAGgtaagtagta ... ctttttgcagCTCATAGGAACT
EST: gi|124942594|gb|EL018847.1|EL018847
EST:     CGCTTGCTCATGGAG                         CTCATAGGAACTCCATCAGAAGAAGAGCTCGAGTTCTTGAACGAAAACGCA
genomic: CGCTTGCTCATGGAGgtaagtagta ... ctttttgcagCTCATAGGAACTCCATCAGAAGAAGAGCTCGAGTTCTTGAACGAAAACGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaataagctttgaagcactaaagaaacagaccgagaccattttctttttgcagCTCATAGGAACTCCATCAGAAGAAGAGCTCGAGTTCTTGAACGAAAACGCAAAGCGATACATAAGACAGCTTCCACCTTATCCTCGCCAATCCATCACTG
                 cactaaa  putative branch site (score: 2)
                                      ccattttctttttgc  putative PPT
                                        attttcttttt  TA-rich tract