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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGTTCTTAACAGTGATGTGATTAGTGAGTACCCTCTTAAAGAAATGCTTGAGTTTCACAAATCTCACGGTGGGGAAGCCTCCATAATGGTAACAAAGgtgagattatcgaaacataatactctccagttacgagataagtacgttattcatctaatgtggacttgcatgtattggttatatag

Basic information

species Arabidopsis thaliana
transcript AT2G39770.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124813848|gb|EH898714.1|EH898714
EST:     ATGGTAACAAAG                         GTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGA
genomic: ATGGTAACAAAGgtgagattat ... ggttatatagGTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGA
EST: gi|125255418|gb|EL269503.1|EL269503
EST:     TTTCACAAATCTCACGGTGGGGAAGCCTCCATAATGGTAACAAAG                         GTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGA
genomic: TTTCACAAATCTCACGGTGGGGAAGCCTCCATAATGGTAACAAAGgtgagattat ... ggttatatagGTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGA
EST: gi|164143500|gb|ES112441.1|ES112441
EST:     AATCTCACGGTGGGGAAGCCTCCATAATGGTAACAAAG                         GTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGA
genomic: AATCTCACGGTGGGGAAGCCTCCATAATGGTAACAAAGgtgagattat ... ggttatatagGTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGA
EST: gi|125008282|gb|EL080551.1|EL080551
EST:     AGTTTCACAAATCTCACGGTGGGGAAG-CTCCATAATGGTAACAAAG                         GTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGA
genomic: AGTTTCACAAATCTCACGGTGGGGAAGCCTCCATAATGGTAACAAAGgtgagattat ... ggttatatagGTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGA
EST: gi|125104123|gb|EL158298.1|EL158298
EST:     TGGGGAAGCCTCCATAATGGTAACAAAG                         GTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGA
genomic: TGGGGAAGCCTCCATAATGGTAACAAAGgtgagattat ... ggttatatagGTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGA