1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aatgaatcatttttttatgtgctcaagttattgtatggattgttctgtttctagcatgttttggttagacattgttaagatctgacgtttgcattttcagGAAAAGGAGTTAGAGCATCATCAAGATGAAGGCACTCATTCTTGTTGGAGGCTTCGGCACTCGCTTGAGACCATTGACTCTCAGTTTCCCAAAGCCCCTT
species | Arabidopsis thaliana |
transcript | AT2G39770.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TACAGCCATTTCCCAGCTCAGATCTCTGATCCGGTGAGATCTCTCTCAAG GAAAAGGAGTTAGAGCATCATCAAGATGAAGGCACTCATTCTTGTTGGAGGEST: gi|116433537|gb|EG476129.1|EG476129
genomic: TACAGCCATTTCCCAGCTCAGATCTCTGATCCGGTGAGATCTCTCTCAAGgtaatgcccc ... gcattttcagGAAAAGGAGTTAGAGCATCATCAAGATGAAGGCACTCATTCTTGTTGGAGG
EST: TACAGCCATTTCCCAGCTCAAATCTCTGATCCGGTGAGATCTCTCTCAAG GAAAAGGAGTTAGAGCATCATCAAGATGAAGGCACTCATTCTTGTTGGAGGEST: gi|116433540|gb|EG476132.1|EG476132
genomic: TACAGCCATTTCCCAGCTCAGATCTCTGATCCGGTGAGATCTCTCTCAAGgtaatgcccc ... gcattttcagGAAAAGGAGTTAGAGCATCATCAAGATGAAGGCACTCATTCTTGTTGGAGG
EST: TACAGCCATTTCCCAGCTCAGATCTCTGATCCGGTGAGATCTCTCTCAAG GAAAAGGAGTTAGAGCATCATCAAGATGAAGGCACTCATTCTTGTTGGAGG
genomic: TACAGCCATTTCCCAGCTCAGATCTCTGATCCGGTGAGATCTCTCTCAAGgtaatgcccc ... gcattttcagGAAAAGGAGTTAGAGCATCATCAAGATGAAGGCACTCATTCTTGTTGGAGG
tgtttctagcatgttttggttagacattgttaagatctgacgtttgcattttcagGAAAAGGAGTTAGAGCATCATCAAGATGAAGGCACTCATTCTTGTTGGAGGCTTCGGCACTCGCTTGAGACCATTGACTCTCAGTTTCCCAAAGCCCCTT
atctgac putative branch site (score: 3)
cattttc putative PPT
attgttaa TA-rich tract