1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATAGAGGCTCTTAAGGCAGTTGGAGTTGATGAAGTGGTTTTGGCCATCAATTATCAGCCAGAGgtaagatactaatctctcttaacttttttttttgcagctattttctgtttacatatgtttgtatttaccatttgctctgtttcgacag
species | Arabidopsis thaliana |
transcript | AT2G39770.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGCAGTTGGAGTTGATGAAGTGGTTTTGGCCATCAATTATCAGCCAGAG GTGATGCTGAACTTCTTGAAGGACTTTGAGACCAAGCTGGAAATCAAAATCEST: gi|124733228|gb|EH824630.1|EH824630
genomic: AGGCAGTTGGAGTTGATGAAGTGGTTTTGGCCATCAATTATCAGCCAGAGgtaagatact ... gtttcgacagGTGATGCTGAACTTCTTGAAGGACTTTGAGACCAAGCTGGAAATCAAAATC
EST: TTATCAGCCAGAG GTGATGCTGAACTTCTTGAAGGACTTTGAGACCAAGCTGGAAATCAAAATCEST: gi|116433537|gb|EG476129.1|EG476129
genomic: TTATCAGCCAGAGgtaagatact ... gtttcgacagGTGATGCTGAACTTCTTGAAGGACTTTGAGACCAAGCTGGAAATCAAAATC
EST: AGGCAGTTGGAGTTGATGAAGTGGTTTTGGCCATCAATTATCAGCCAGAG GTGATGCTGAACTTCTTGAAGGACTTTGAGACCAAGCTGGAAATCAAAATCEST: gi|164162463|gb|ES125901.1|ES125901
genomic: AGGCAGTTGGAGTTGATGAAGTGGTTTTGGCCATCAATTATCAGCCAGAGgtaagatact ... gtttcgacagGTGATGCTGAACTTCTTGAAGGACTTTGAGACCAAGCTGGAAATCAAAATC
EST: GGCCATCAATTATCAGCCAGAG GTGATGCTGAACTTATTGAAGGACTTTGAGACCAAGCTGGAAATCAAAATCEST: gi|116433540|gb|EG476132.1|EG476132
genomic: GGCCATCAATTATCAGCCAGAGgtaagatact ... gtttcgacagGTGATGCTGAACTTCTTGAAGGACTTTGAGACCAAGCTGGAAATCAAAATC
EST: AGGCAGTTGGAGTTGATGAAGTGGTTTTGGCCATCAATTATCAGCCAGAG GTGATGCTGAACTTCTTGAAGGACTTTGAGACCAAGCTGGAAATCAAAATCEST: gi|164207977|gb|ES045940.1|ES045940
genomic: AGGCAGTTGGAGTTGATGAAGTGGTTTTGGCCATCAATTATCAGCCAGAGgtaagatact ... gtttcgacagGTGATGCTGAACTTCTTGAAGGACTTTGAGACCAAGCTGGAAATCAAAATC
EST: CCATCAATTATCAGCCAGAG GTGATGCTGAACTTATTGAAGGACTTTGAGACCAAGCTGGAAATCAAAATC
genomic: CCATCAATTATCAGCCAGAGgtaagatact ... gtttcgacagGTGATGCTGAACTTCTTGAAGGACTTTGAGACCAAGCTGGAAATCAAAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGAGGCTCTTAAGGCAGTTGGAGTTGATGAAGTGGTTTTGGCCATCAATTATCAGCCAGAGgtaagatactaatctctcttaacttttttttttgcagctattttctgtttacatatgtttgtatttaccatttgctctgtttcgacag
- - - - - - - - - TTGGAG