1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagattatcgaaacataatactctccagttacgagataagtacgttattcatctaatgtggacttgcatgtattggttatatagGTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGAAGAGTGGAGAAGTTTGTGGAAAAGCCAAAACTGTATGTAGGTAACAAGA
species | Arabidopsis thaliana |
transcript | AT2G39770.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGGTAACAAAG GTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGAEST: gi|125255418|gb|EL269503.1|EL269503
genomic: ATGGTAACAAAGgtgagattat ... ggttatatagGTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGA
EST: TTTCACAAATCTCACGGTGGGGAAGCCTCCATAATGGTAACAAAG GTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGAEST: gi|164143500|gb|ES112441.1|ES112441
genomic: TTTCACAAATCTCACGGTGGGGAAGCCTCCATAATGGTAACAAAGgtgagattat ... ggttatatagGTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGA
EST: AATCTCACGGTGGGGAAGCCTCCATAATGGTAACAAAG GTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGAEST: gi|125008282|gb|EL080551.1|EL080551
genomic: AATCTCACGGTGGGGAAGCCTCCATAATGGTAACAAAGgtgagattat ... ggttatatagGTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGA
EST: AGTTTCACAAATCTCACGGTGGGGAAG-CTCCATAATGGTAACAAAG GTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGAEST: gi|125104123|gb|EL158298.1|EL158298
genomic: AGTTTCACAAATCTCACGGTGGGGAAGCCTCCATAATGGTAACAAAGgtgagattat ... ggttatatagGTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGA
EST: TGGGGAAGCCTCCATAATGGTAACAAAG GTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGA
genomic: TGGGGAAGCCTCCATAATGGTAACAAAGgtgagattat ... ggttatatagGTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGA
tacgagataagtacgttattcatctaatgtggacttgcatgtattggttatatagGTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGAAGAGTGGAGAAGTTTGTGGAAAAGCCAAAACTGTATGTAGGTAACAAGA
atctaat putative branch site (score: 3)
ttatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagattatcgaaacataatactctccagttacgagataagtacgttattcatctaatgtggacttgcatgtattggttatatagGTGGATGAACCGTCGAAATATGGAGTGGTTGTTATGGAAGAAAGCACTGGAAGAGTGGAGAAGTTTGTGGAAAAGCCAAAACTGTATGTAGGTAACAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT