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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTCTTGTTGGAGGCTTCGGCACTCGCTTGAGACCATTGACTCTCAGTTTCCCAAAGCCCCTTGTTGATTTTGCTAATAAACCCATGATCCTTCATCAGgtaatctatcttaaatttgccgctttagtctgccagttcttacctatgcctatgtttgaaccgaggcatgttttcttgtag

Basic information

species Arabidopsis thaliana
transcript AT2G39770.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502516|gb|HO208056.1|HO208056
EST:     TCCCAAAGCCCCTTGTCGATTTTGCTAATAAACCCATGATCCTTCATCAG                         ATAGAGGCTCTTAAGGCAGTTGGAGTTGATGAAGTGGTTTTGGCCATCAAT
genomic: TCCCAAAGCCCCTTGTTGATTTTGCTAATAAACCCATGATCCTTCATCAGgtaatctatc ... tttcttgtagATAGAGGCTCTTAAGGCAGTTGGAGTTGATGAAGTGGTTTTGGCCATCAAT
EST: gi|116433537|gb|EG476129.1|EG476129
EST:     TCCCAAAGCCCCTTGTTGATTTTGCTAATAAACCCATGATCCTTCATCAG                         ATAGAGGCTCTTAAGGCAGTTGGAGTTGATGAAGTGGTTTTGGCCATCAAT
genomic: TCCCAAAGCCCCTTGTTGATTTTGCTAATAAACCCATGATCCTTCATCAGgtaatctatc ... tttcttgtagATAGAGGCTCTTAAGGCAGTTGGAGTTGATGAAGTGGTTTTGGCCATCAAT
EST: gi|116433540|gb|EG476132.1|EG476132
EST:     TCCCAAAGCCCCTTGTTGATTTTGCTAATAAACCCATGATCCTTCATCAG                         ATAGAGGCTCTTAAGGCAGTTGGAGTTGATGAAGTGGTTTTGGCCATCAAT
genomic: TCCCAAAGCCCCTTGTTGATTTTGCTAATAAACCCATGATCCTTCATCAGgtaatctatc ... tttcttgtagATAGAGGCTCTTAAGGCAGTTGGAGTTGATGAAGTGGTTTTGGCCATCAAT
EST: gi|125159603|gb|EL187609.1|EL187609
EST:     TGTTGATTTTGCTAATAAACCCATGATCCTTCATCAG                         ATAGAGGCTCTTAAGGCAGTTGGAGTTGATGAAGTGGTTTTGGCCATCAAT
genomic: TGTTGATTTTGCTAATAAACCCATGATCCTTCATCAGgtaatctatc ... tttcttgtagATAGAGGCTCTTAAGGCAGTTGGAGTTGATGAAGTGGTTTTGGCCATCAAT
EST: gi|124803219|gb|EH891648.1|EH891648
EST:     ACCCATGATCCTTCATCAG                         ATAGAGGCTCTTAAGGCAGTTGGAGTTGATGAAGTGGTTTTGGCCATCAAT
genomic: ACCCATGATCCTTCATCAGgtaatctatc ... tttcttgtagATAGAGGCTCTTAAGGCAGTTGGAGTTGATGAAGTGGTTTTGGCCATCAAT