Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgctaatctctaacttgcgtattttattttgcagtcctgtagatatatgagtgtcaatgttactaactatgttgatcttcttttgaagCAATGTCTCAAACAATTTCCTGGTGGGAAAAATACCTTCTGACGGCCTACTCGCTAGACTCTCGAGGGACTC

Basic information

species Arabidopsis thaliana
transcript AT2G35620.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125212985|gb|EL227926.1|EL227926
EST:     AATGGAGCTATCCCTGCTTCACTTGGGCAGTTGAAAAGGCTTACTAAATT                         CAATGTCTCAAACAATTTCCTGGTGGGAAAAATACCTTCTGACGGCCTACT
genomic: AATGGAGCTATCCCTGCTTCACTTGGGCAGTTGAAAAGGCTTACTAAATTgtgagttgct ... tcttttgaagCAATGTCTCAAACAATTTCCTGGTGGGAAAAATACCTTCTGACGGCCTACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcctgtagatatatgagtgtcaatgttactaactatgttgatcttcttttgaagCAATGTCTCAAACAATTTCCTGGTGGGAAAAATACCTTCTGACGGCCTACTCGCTAGACTCTCGAGGGACTC
                                          tcttctttt  CT-rich tract
      tagatatat  TA-rich tract