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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgcgtcttgtgagtgatgataaactcagtcacaagtttagctagttgacaagaatcgttgtgaatcttttataatttattgtccttttattccttgcagATACTTGCAGAATAATTACATCACTGGGACAATCCCAAGTGAAATAGGAAACCTGTCCGGGCTGAAAAACCT

Basic information

species Arabidopsis thaliana
transcript AT2G35620.2
intron # 5
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgacaagaatcgttgtgaatcttttataatttattgtccttttattccttgcagATACTTGCAGAATAATTACATCACTGGGACAATCCCAAGTGAAATAGGAAACCTGTCCGGGCTGAAAAACCT
 agttgac  putative branch site (score: 4)
                              tttattgtccttttat  putative PPT
                  aatcttttataattta  TA-rich tract