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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgctcctaaccttttaattaatattattgatgtctagcatatgctctactactcattgtatgtgtattcccatgtcattgcagAATGCTTCACAACAATGCGTTATATCAATCAATACCTGCCTCATTGGGAAATTGCACGGCATTAGAGGGAAT

Basic information

species Arabidopsis thaliana
transcript AT2G35620.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124890698|gb|EH969600.1|EH969600
EST:     GGGGACCTTTACCCCCTGAGCTTGGAAAGCTGGATTCAGTTAAGGCTTTT                         AATGCTTCACAACAATGCGTTATATCAATCAATACCTGCCTCATTAGGGAA
genomic: GGGGACCTTTACCCCCTGAGCTTGGAAAGCTGGA-TCAGTTAAGGCTTTTgtatgtgctc ... gtcattgcagAATGCTTCACAACAATGCGTTATATCAATCAATACCTGCCTCATT-GGGAA
EST: gi|124712072|gb|EH803474.1|EH803474
EST:     GGGGACCTTTACCCCCTGAGCTTGGAAAGCTGGATTCAGTTAAGGCTTTT                         AATGCTTCACAACAATGCGTTATATCAATCAATACCTGCCTCATTGGGAAA
genomic: GGGGACCTTTACCCCCTGAGCTTGGAAAGCTGGA-TCAGTTAAGGCTTTTgtatgtgctc ... gtcattgcagAATGCTTCACAACAATGCGTTATATCAATCAATACCTGCCTCATTGGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgtctagcatatgctctactactcattgtatgtgtattcccatgtcattgcagAATGCTTCACAACAATGCGTTATATCAATCAATACCTGCCTCATTGGGAAATTGCACGGCATTAGAGGGAAT
 tattgat  putative branch site (score: 3)
                          attgtat  TA-rich tract