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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCTCGGGTATCAGACTTTGGGCTTGCCAAGTTGTTAGAGGACGAAGAATCTCATATTACAACCATTGTTGCAGGCACATTCGGTTACTTGGCTCCAGgtactcaattacacagtaataacaatgcttattacttgttgttactatctgttaggacctaaatccgtgaactcataatgagtgttttttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G35620.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35620.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: LOC_Os03g16010.1 (Oryza sativa), 5'ss of exon 12
GAGGCTCGGGTATCAGACTTTGGGCTTGCCAAGTTGTTAGAGGACGAAGAATCTCATATTACAACCATTGTTGCAGGCACATTCGGTTACTTGGCTCCAGgtac-----------------tcaattacacagtaataacaat-gcttattacttgttgttactatctgttaggacct---aaatccgtgaactcataatgagtgttttttgcag-----------------------------
|||||||| |||||||||||||| || || ||| | |||||||||||  |||| |||||||| || || |||||||| ||||| || ||  | || |||||||                  ||| | |    |  | || ||  || ||| ||   |  |||| | ||  | | | ||    | |   |  |   |||   | | |  | |||                               
GAGGCTCGTGTATCAGACTTTGGACTCGCAAAGCTATTAGAGGACGACAAATCCCATATTACTACAATAGTTGCAGGAACATTTGGCTATCTTGCACCAGgtatgttaaaactgttctgtttcattcattgtgggaaaataacagcatataacaaatgcttaccaccttattgcatctctggattttatttatcaatatataatttcatatgctctgagctaatttgcaaaattcaaaatccag

upper sequence: AT2G35620.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM2G479243_T01 (Zea mays), 5'ss of exon 12
GAGGCTCGGGTATCAGACTTTGGGCTTGCCAAGTTGTTAGAGGACGAAGAATCTCATATTACAACCATTGTTGCAGGCACATTCGGTTACTTGGCTCCAGgtactc---aattacacagtaataacaatgcttattacttgttgttactatctgttaggacctaaat--ccgt---gaactcataatgagtgtt----ttttgcag-----------------------------------------
||||| || |||||||||||||| ||||| ||| | ||||||||||||||||| ||||| || || || |||||||| ||||| |||||  | || |||||||      | |    | |  | | | |        |   |   | |   ||||||    | | |||  |||    | |||     ||  || |    | |  | |                                         
GAGGCCCGCGTATCAGACTTTGGACTTGCAAAGCTTTTAGAGGACGAAGAATCCCATATCACTACAATAGTTGCAGGAACATTTGGTTATCTTGCGCCAGgtatgtggaagtcgttctgctacatccagaggggaaaaaagaaatgaacttctgtttactctttaattaccgcatcggactttctctggttgctaaaatatcactgctaatgctctgagctaacatcaacaaaatccaactccacag

upper sequence: AT2G35620.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM5G886952_T01 (Zea mays), 5'ss of exon 12
GAGGCTCGGGTATCAGACTTTGGGCTTGCCAAGTTGTTAGAGGACGAAGAATCTCATATTACAACCATTGTTGCAGGCACATTCGGTTACTTGGCTCCAGgtactc---aattacacagtaataac--aatgcttattacttgttgttactatctgttaggacctaaatccgtgaactcataatgagtgttttttgcag---------------------------------------------------
||||| || |||||||||||||| ||||| ||| | |||||||| |||||||| |||||||| || || |||||||| ||||| || ||| | || |||||||      | |  | | || | | |   | |   |  |   |   | |   ||||||    | | |||| |     ||| | |   | |  ||   |                                                    
GAGGCCCGTGTATCAGACTTTGGACTTGCAAAGCTTTTAGAGGATGAAGAATCACATATTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAGgtatgtggaagtccctctgttacatcctgaggggaaagagaagaaatgaacttctgtttactctttaatc-gccgcttcagactttctctggttgctaaaatatcattgttaatgctctgagctaacaccaacgaaatccgaatccacag

upper sequence: AT2G35620.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv02s0087g00170.t01 (Vitis vinifera), 5'ss of exon 12
GAGGCTCGGGTATCAGACTTTGGGCTTGCCAAGTTGTTAGAGGACGAAGAATCTCATATTACAACCATTGTTGCAGGCACATTCGGTTACTTGGCTCCAGgtactcaatt--acacagtaataacaatgcttattacttgttgttactatctgttaggacctaaatccgtga-actcataatg-agtgttttttgcag--
|||||||| ||||| |||||||| ||||| || ||||| ||||| || ||||||||||||||||||||||| ||||| || || ||||| ||||||||||||    |||     | | |  | |     | |||||  | |    |   ||   | ||  ||       ||| |  | | ||| | || |       |  
GAGGCTCGAGTATCTGACTTTGGACTTGCTAAATTGTTGGAGGATGAGGAATCTCATATTACAACCATTGTAGCAGGAACTTTTGGTTATTTGGCTCCAGgtgagtaatgtagtaaactgttcatctcacatattatatttaagaatgttccaattggcacttggcttttgatagacttgatggaatggtagaaaatgat