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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaccctcaacttcatatttacgggtttccttaacggagaattatgattctattaagtgaaatttttgaatgtgtagAGAGAGGCGAGCAGCTGGATTGGGATTCGCGAGTTAATATCATAATAGGAGCGGCAAAAGGGTTGGCATACTTGCATCATGATTGTTCTCCTAGGATTAT

Basic information

species Arabidopsis thaliana
transcript AT2G35620.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35620.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GRMZM2G479243_T01 (Zea mays), 3'ss of exon 11
gtaaaccctcaacttcatatttacgggtttccttaacggagaat--tatgattctattaagtgaaatttttg-----------------aatgtgtagAGAGAGGC--GAGCAGCTGGATTGGGATTCGCGAGTTAATATCATAATAGGAGCGGCAAAAGGGTTGGCATACTTGCATCATGATTGTTCTCCTAGGATTAT
    |  | ||  ||  | ||   |      |  |  | | |||   || | | | ||| ||  | |  |||                 ||| | |  ||| | |   || ||| ||||||||||| | ||  |||| |||||| | ||||| |||||||| ||| | ||||||||||| |||||||| ||| | || ||
taggattcacacattttttttcttgatccgacacagtgcaaaatagcattaatattttatgtttactccttgctttgtttttgtccgtaaatctttgcagAAAAGTCTGAACAGTTGGATTGGGATGCACGTATTAACATCATACTTGGAGCTGCAAAAGGCTTGTCTTACTTGCATCACGATTGTTCGCCTCGAATAAT

upper sequence: AT2G35620.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA09G34940.2 (Glycine max), 3'ss of exon 11
------gtaaaccctcaacttcatatttacgggtttcct-taacggagaatta--tgattctatta--------agtgaaatttttgaa----tgtgtagAGAGAGGCGAGCAGCTGGATTGGGATTCGCGAGTTAATATCATAATAGGAGCGGCAAAAGGGTTGGCATACTTGCATCATGATTGTTCTCCTAGGATTAT
       |      ||   || | ||||||   ||   | || || |   ||   | | || |||         | |||  ||| |||     ||   ||| ||||  || || || || |||||||||||  | ||||| || || ||||| ||||||||| | || |||||||| ||||||||||| || ||||| ||
cagaagatgtgttttccttttgaaatttacatcttcagtgtatcgtatctttgcttaaatcaatttggggggataatgatgtttgtgatgcattgaacagAAAGAGCTGATCAACTAGACTGGGATTCGCGCTTGAATATAATCATGGGAGCTGCAAAAGGGCTTGCCTACTTGCACCATGATTGTTCCCCCAGGATCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggtttccttaacggagaattatgattctattaagtgaaatttttgaatgtgtagAGAGAGGCGAGCAGCTGGATTGGGATTCGCGAGTTAATATCATAATAGGAGCGGCAAAAGGGTTGGCATACTTGCATCATGATTGTTCTCCTAGGATTAT
      ccttaac  putative branch site (score: 3)
                 aattatgattctatta  TA-rich tract