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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtcttcaaatcaagctgaaataaacctagcccggttcttgagttttatagtcagttactttttttttttaatcttaaaacactggccttatgagtttcattctatgtgactagCTATCCAAGGCGCCGGATGGGAACGGGGGAGTTTATACAG

Basic information

species Arabidopsis thaliana
transcript AT2G35020.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828124|gb|CK117808.1|CK117808
EST:     TGCCTTGCATTTCAAAGGATGGCAAGTTTATCATGGAGACACCTTTCAGC                         CTATCCAAGGCGCCGGATGGGAACGGGGGAGTTTATACAG
genomic: TGCCTTGCATTTCAAAGGATGGCAAGTTTATCATGGAGACACCTTTCAGCgtatgtgtct ... atgtgactagCTATCCAAGGCGCCGGATGGGAACGGGGGAGTTTATACAG
EST: gi|116428980|gb|EG471572.1|EG471572
EST:     TGCCTTGCATTTCAAAGGATGGCAAGTTTATCATGGAGACACCTTTCAGC                         CTATCCAAGGCGCCGGATGGGAACGGGGGAGTTTATACAG
genomic: TGCCTTGCATTTCAAAGGATGGCAAGTTTATCATGGAGACACCTTTCAGCgtatgtgtct ... atgtgactagCTATCCAAGGCGCCGGATGGGAACGGGGGAGTTTATACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttttttaatcttaaaacactggccttatgagtttcattctatgtgactagCTATCCAAGGCGCCGGATGGGAACGGGGGAGTTTATACAG
       ttttaat  putative branch site (score: 3)
     ttttttaatcttaaaa  TA-rich tract