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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagttctcaactctgtattctatttatctgtacaactctaccatttcttataccttgtttcacataatattttgcctgcagCAAGTCCAACTCGCCCAGTTACAATACAGTGGTATATAATGACCAGTCCATTTACTCATGAACCAACACAAAAATTCTTCAAGAGTCACAAGTATTTTGG

Basic information

species Arabidopsis thaliana
transcript AT2G35020.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116428980|gb|EG471572.1|EG471572
EST:     TGAGAGGATCTTATGTGTCCAAAGGCTTGCTTCTCAGGCAATGAGTGAGG                         CAAGTCCAACTCGCCCAGTTACAATACAGTGGTATATAATGACCAGTCCAT
genomic: TGAGAGGATCTTATGTGTCCAAAGGCTTGCTTCTCAGGCAATGAGTGAGGgtatagttct ... ttgcctgcagCAAGTCCAACTCGCCCAGTTACAATACAGTGGTATATAATGACCAGTCCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtacaactctaccatttcttataccttgtttcacataatattttgcctgcagCAAGTCCAACTCGCCCAGTTACAATACAGTGGTATATAATGACCAGTCCATTTACTCATGAACCAACACAAAAATTCTTCAAGAGTCACAAGTATTTTGG
                                           ttttgcct  CT-rich tract
                               tttcacataatatttt  TA-rich tract